Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BARD7_RS12030 Genome accession   NZ_CP016913
Coordinates   2449513..2450265 (-) Length   250 a.a.
NCBI ID   WP_065981992.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2444513..2455265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS12005 (BARD7_02461) mreC 2444948..2445811 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BARD7_RS12010 (BARD7_02462) mreB 2445842..2446855 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  BARD7_RS12015 (BARD7_02463) radC 2446947..2447642 (-) 696 WP_065981989.1 RadC family protein -
  BARD7_RS12020 (BARD7_02464) - 2447674..2448243 (-) 570 WP_065981990.1 Maf family protein -
  BARD7_RS12025 (BARD7_02465) - 2448385..2449386 (-) 1002 WP_065981991.1 SPOR domain-containing protein -
  BARD7_RS12030 (BARD7_02466) comC 2449513..2450265 (-) 753 WP_065981992.1 prepilin peptidase Machinery gene
  BARD7_RS12035 (BARD7_02467) - 2450404..2451696 (-) 1293 WP_065981993.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BARD7_RS12040 (BARD7_02468) - 2451755..2454397 (-) 2643 WP_065981994.1 valine--tRNA ligase -
  BARD7_RS12045 (BARD7_02469) - 2454848..2455039 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26889.50 Da        Isoelectric Point: 9.0703

>NTDB_id=193643 BARD7_RS12030 WP_065981992.1 2449513..2450265(-) (comC) [Bacillus amyloliquefaciens strain RD7-7]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSLMYPAAECWTA
CLFTAAGIHFGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=193643 BARD7_RS12030 WP_065981992.1 2449513..2450265(-) (comC) [Bacillus amyloliquefaciens strain RD7-7]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCTTGCCGCTATCCTGGGGGGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGAAGATGCAGAAACTGCCGTGGGAAGCTGTCGCTTATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAGAGAACTGTTAGTCGCGCTTTTATTTCTGTCGCTATTAAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTTTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCGGGTGATGTGAAACTGTTTGGGGTAATTGGCCTTGCGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCTGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGAA
AAAAGCAGCCTTTCCCATTTGCGCCGGCCATTGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGATGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592

Multiple sequence alignment