Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BARD7_RS10945 Genome accession   NZ_CP016913
Coordinates   2250491..2250826 (+) Length   111 a.a.
NCBI ID   WP_014470659.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2245491..2255826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS10925 (BARD7_02242) gcvT 2246095..2247195 (-) 1101 WP_065981873.1 glycine cleavage system aminomethyltransferase GcvT -
  BARD7_RS10930 (BARD7_02243) - 2247619..2249289 (+) 1671 WP_065981874.1 DEAD/DEAH box helicase -
  BARD7_RS10935 (BARD7_02244) - 2249310..2250104 (+) 795 WP_065981875.1 YqhG family protein -
  BARD7_RS10940 (BARD7_02245) sinI 2250284..2250457 (+) 174 WP_013352860.1 anti-repressor SinI Regulator
  BARD7_RS10945 (BARD7_02246) sinR 2250491..2250826 (+) 336 WP_014470659.1 transcriptional regulator SinR Regulator
  BARD7_RS10950 (BARD7_02247) tasA 2250874..2251659 (-) 786 WP_065981876.1 biofilm matrix protein TasA -
  BARD7_RS10955 (BARD7_02248) sipW 2251724..2252308 (-) 585 WP_065981877.1 signal peptidase I SipW -
  BARD7_RS10960 (BARD7_02249) tapA 2252280..2252951 (-) 672 WP_065981878.1 amyloid fiber anchoring/assembly protein TapA -
  BARD7_RS10965 (BARD7_02250) - 2253209..2253538 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  BARD7_RS10970 (BARD7_02251) - 2253579..2253758 (-) 180 WP_016938971.1 YqzE family protein -
  BARD7_RS10975 (BARD7_02252) comGG 2253815..2254192 (-) 378 WP_065981879.1 competence type IV pilus minor pilin ComGG Machinery gene
  BARD7_RS10980 comGF 2254194..2254694 (-) 501 WP_231131085.1 competence type IV pilus minor pilin ComGF -
  BARD7_RS10985 (BARD7_02254) comGE 2254603..2254917 (-) 315 WP_065981881.1 competence type IV pilus minor pilin ComGE Machinery gene
  BARD7_RS10990 (BARD7_02255) comGD 2254901..2255338 (-) 438 WP_065981882.1 competence type IV pilus minor pilin ComGD Machinery gene
  BARD7_RS10995 (BARD7_02256) comGC 2255328..2255636 (-) 309 WP_081309506.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12986.67 Da        Isoelectric Point: 7.2026

>NTDB_id=193629 BARD7_RS10945 WP_014470659.1 2250491..2250826(+) (sinR) [Bacillus amyloliquefaciens strain RD7-7]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLEYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=193629 BARD7_RS10945 WP_014470659.1 2250491..2250826(+) (sinR) [Bacillus amyloliquefaciens strain RD7-7]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGTGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGAATATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982

Multiple sequence alignment