Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BARD7_RS09795 Genome accession   NZ_CP016913
Coordinates   2041708..2042316 (+) Length   202 a.a.
NCBI ID   WP_047475764.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036708..2047316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS09755 (BARD7_02002) - 2037778..2038284 (-) 507 WP_013352638.1 PTS sugar transporter subunit IIA -
  BARD7_RS09760 (BARD7_02003) - 2038421..2038834 (+) 414 WP_081309503.1 Hsp20/alpha crystallin family protein -
  BARD7_RS09765 (BARD7_02004) - 2038864..2039289 (-) 426 WP_065981740.1 YppG family protein -
  BARD7_RS09770 (BARD7_02005) - 2039474..2039656 (+) 183 WP_003153532.1 YppF family protein -
  BARD7_RS09775 (BARD7_02006) - 2039695..2040063 (-) 369 WP_013352641.1 YppE family protein -
  BARD7_RS09780 (BARD7_02007) - 2040109..2040354 (-) 246 WP_065981741.1 DUF5446 family protein -
  BARD7_RS09785 (BARD7_02008) sspM 2040557..2040661 (+) 105 WP_065981742.1 acid-soluble spore protein SspM -
  BARD7_RS09790 (BARD7_02009) - 2040704..2041666 (-) 963 WP_065981743.1 DUF2515 domain-containing protein -
  BARD7_RS09795 (BARD7_02010) recU 2041708..2042316 (+) 609 WP_047475764.1 Holliday junction resolvase RecU Machinery gene
  BARD7_RS09800 (BARD7_02011) - 2042355..2045138 (+) 2784 WP_065981744.1 transglycosylase domain-containing protein -
  BARD7_RS09805 (BARD7_02012) - 2045216..2045707 (-) 492 WP_065981745.1 YpoC family protein -
  BARD7_RS09810 (BARD7_02013) nth 2045704..2046363 (-) 660 WP_016939068.1 endonuclease III -
  BARD7_RS09815 (BARD7_02014) dnaD 2046382..2047080 (-) 699 WP_013352649.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.82 Da        Isoelectric Point: 9.4375

>NTDB_id=193625 BARD7_RS09795 WP_047475764.1 2041708..2042316(+) (recU) [Bacillus amyloliquefaciens strain RD7-7]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=193625 BARD7_RS09795 WP_047475764.1 2041708..2042316(+) (recU) [Bacillus amyloliquefaciens strain RD7-7]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment