Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BARD7_RS08205 Genome accession   NZ_CP016913
Coordinates   1716482..1716853 (+) Length   123 a.a.
NCBI ID   WP_231131118.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1711482..1721853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS08200 (BARD7_01679) - 1714918..1716129 (-) 1212 WP_065982880.1 cytochrome P450 family protein -
  BARD7_RS08205 (BARD7_01680) nucA/comI 1716482..1716853 (+) 372 WP_231131118.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BARD7_RS08210 (BARD7_01681) - 1716903..1717670 (+) 768 WP_065982881.1 YoaK family protein -
  BARD7_RS08215 (BARD7_01682) - 1717691..1718053 (-) 363 WP_065981515.1 hypothetical protein -
  BARD7_RS08220 (BARD7_01683) - 1718249..1719577 (-) 1329 WP_065981516.1 S8 family peptidase -
  BARD7_RS08225 (BARD7_01684) - 1719761..1719994 (+) 234 WP_014471844.1 hypothetical protein -
  BARD7_RS08230 (BARD7_01685) - 1720250..1720957 (+) 708 WP_065981517.1 poly-gamma-glutamate hydrolase family protein -
  BARD7_RS08235 (BARD7_01686) - 1721017..1721469 (+) 453 WP_065981518.1 OsmC family protein -
  BARD7_RS08240 (BARD7_01687) - 1721483..1721836 (-) 354 WP_065981519.1 DMT family transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13331.79 Da        Isoelectric Point: 6.0748

>NTDB_id=193624 BARD7_RS08205 WP_231131118.1 1716482..1716853(+) (nucA/comI) [Bacillus amyloliquefaciens strain RD7-7]
MSAGIHSENTAEAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEHRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=193624 BARD7_RS08205 WP_231131118.1 1716482..1716853(+) (nucA/comI) [Bacillus amyloliquefaciens strain RD7-7]
ATGAGCGCCGGCATCCATTCGGAGAATACTGCGGAAGCTGCGTCCCGATACGATCAGGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGCATAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCTTCAGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCAGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.617

86.992

0.545

Multiple sequence alignment