Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BARD7_RS06805 Genome accession   NZ_CP016913
Coordinates   1372655..1372939 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367655..1377939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS06790 (BARD7_01392) - 1368903..1369811 (+) 909 WP_065981361.1 ketopantoate reductase family protein -
  BARD7_RS06795 (BARD7_01393) - 1369841..1371073 (-) 1233 WP_065981362.1 aminopeptidase -
  BARD7_RS18915 (BARD7_01394) - 1371174..1371308 (-) 135 WP_013352107.1 protein YkpC -
  BARD7_RS06800 (BARD7_01395) mreBH 1371379..1372386 (-) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  BARD7_RS06805 (BARD7_01396) abrB 1372655..1372939 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BARD7_RS06810 (BARD7_01397) - 1373112..1374416 (+) 1305 WP_065981363.1 ATP-binding protein -
  BARD7_RS06815 (BARD7_01398) - 1374418..1375245 (+) 828 WP_065981364.1 gamma-glutamylcyclotransferase -
  BARD7_RS06820 (BARD7_01399) ktrC 1375286..1375951 (+) 666 WP_065981365.1 Ktr system potassium transporter KtrC -
  BARD7_RS06825 (BARD7_01400) ade 1376100..1377833 (+) 1734 WP_065981366.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=193619 BARD7_RS06805 WP_013352109.1 1372655..1372939(+) (abrB) [Bacillus amyloliquefaciens strain RD7-7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=193619 BARD7_RS06805 WP_013352109.1 1372655..1372939(+) (abrB) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGAGAAATTACTCCCGATAATCAGGAGTACGGAAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment