Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BARD7_RS06700 Genome accession   NZ_CP016913
Coordinates   1352139..1352735 (+) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347139..1357735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS06670 (BARD7_01367) - 1347176..1347631 (+) 456 WP_065981347.1 flavodoxin -
  BARD7_RS06675 (BARD7_01368) dapD 1347713..1348423 (+) 711 WP_065981348.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BARD7_RS06680 (BARD7_01369) - 1348494..1349618 (+) 1125 WP_065981349.1 N-acetyldiaminopimelate deacetylase -
  BARD7_RS06685 (BARD7_01370) - 1349679..1349924 (+) 246 WP_013352084.1 YkuS family protein -
  BARD7_RS06690 (BARD7_01371) - 1349958..1350764 (-) 807 WP_013352085.1 mechanosensitive ion channel family protein -
  BARD7_RS06695 (BARD7_01372) - 1351214..1351672 (+) 459 WP_065981350.1 TlpA family protein disulfide reductase -
  BARD7_RS06700 (BARD7_01374) rok 1352139..1352735 (+) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  BARD7_RS06705 (BARD7_01375) - 1352757..1353749 (-) 993 WP_065981351.1 sporulation protein -
  BARD7_RS06710 (BARD7_01376) - 1353896..1354498 (+) 603 WP_065981352.1 molybdenum cofactor guanylyltransferase -
  BARD7_RS06715 (BARD7_01377) - 1354551..1355570 (+) 1020 WP_065521389.1 molybdopterin-synthase adenylyltransferase MoeB -
  BARD7_RS06720 (BARD7_01378) glp 1355588..1356880 (+) 1293 WP_013352092.1 gephyrin-like molybdotransferase Glp -
  BARD7_RS06725 (BARD7_01379) mobB 1356841..1357362 (+) 522 WP_065981353.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=193618 BARD7_RS06700 WP_013352088.1 1352139..1352735(+) (rok) [Bacillus amyloliquefaciens strain RD7-7]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=193618 BARD7_RS06700 WP_013352088.1 1352139..1352735(+) (rok) [Bacillus amyloliquefaciens strain RD7-7]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GCCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATAACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAAGCGGCAAAACTGCGCGAAGCAGCCATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTAAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833

Multiple sequence alignment