Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BARD7_RS06595 Genome accession   NZ_CP016913
Coordinates   1336139..1336603 (-) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331139..1341603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS06580 (BARD7_01349) - 1331619..1333439 (+) 1821 WP_065981335.1 PAS domain-containing protein -
  BARD7_RS06585 (BARD7_01350) - 1333420..1334633 (-) 1214 Protein_1276 aminotransferase A -
  BARD7_RS19105 (BARD7_01351) - 1334835..1334996 (-) 162 WP_196769346.1 hypothetical protein -
  BARD7_RS06590 (BARD7_01352) cheV 1335185..1336096 (+) 912 WP_065981337.1 chemotaxis protein CheV -
  BARD7_RS06595 (BARD7_01353) kre 1336139..1336603 (-) 465 WP_013352067.1 YkyB family protein Regulator
  BARD7_RS06600 (BARD7_01354) - 1336726..1338018 (-) 1293 WP_065981338.1 MFS transporter -
  BARD7_RS06605 (BARD7_01355) - 1338094..1338588 (-) 495 WP_155759189.1 L,D-transpeptidase family protein -
  BARD7_RS06610 (BARD7_01356) - 1338663..1339526 (-) 864 WP_065981340.1 metallophosphoesterase -
  BARD7_RS06615 (BARD7_01357) fadH 1339670..1340434 (+) 765 WP_065981341.1 2,4-dienoyl-CoA reductase -
  BARD7_RS19305 (BARD7_01358) - 1340549..1341084 (+) 536 Protein_1284 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=193617 BARD7_RS06595 WP_013352067.1 1336139..1336603(-) (kre) [Bacillus amyloliquefaciens strain RD7-7]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=193617 BARD7_RS06595 WP_013352067.1 1336139..1336603(-) (kre) [Bacillus amyloliquefaciens strain RD7-7]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCAAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCCCTTGCCG
CCAACAGACAGCAGCCCGCTTATCATAAACCCGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935

Multiple sequence alignment