Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BARD7_RS05000 Genome accession   NZ_CP016913
Coordinates   1024505..1025083 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019505..1030083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS19550 - 1020007..1020576 (-) 570 WP_418202123.1 methyl-accepting chemotaxis protein -
  BARD7_RS19555 - 1020766..1021299 (-) 534 Protein_939 protoglobin domain-containing protein -
  BARD7_RS04985 (BARD7_01011) - 1021422..1022945 (-) 1524 WP_065981107.1 FAD-dependent oxidoreductase -
  BARD7_RS04990 (BARD7_01012) - 1023069..1023926 (+) 858 WP_065981108.1 SDR family oxidoreductase -
  BARD7_RS04995 (BARD7_01013) - 1023956..1024189 (-) 234 WP_065981109.1 IDEAL domain-containing protein -
  BARD7_RS05000 (BARD7_01014) comK 1024505..1025083 (+) 579 WP_013351744.1 competence protein ComK Regulator
  BARD7_RS05005 (BARD7_01015) - 1025228..1025599 (+) 372 WP_065981110.1 iron chaperone -
  BARD7_RS05010 (BARD7_01016) - 1025647..1026858 (-) 1212 WP_065981111.1 GNAT family N-acetyltransferase -
  BARD7_RS05015 (BARD7_01017) - 1027012..1027722 (-) 711 WP_065981112.1 YrpD family protein -
  BARD7_RS05020 (BARD7_01018) - 1027918..1028187 (+) 270 WP_065981113.1 excalibur calcium-binding domain-containing protein -
  BARD7_RS05025 (BARD7_01019) - 1028219..1028536 (-) 318 WP_003155166.1 YbjQ family protein -
  BARD7_RS05030 (BARD7_01020) - 1028578..1030047 (-) 1470 WP_065981114.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=193606 BARD7_RS05000 WP_013351744.1 1024505..1025083(+) (comK) [Bacillus amyloliquefaciens strain RD7-7]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=193606 BARD7_RS05000 WP_013351744.1 1024505..1025083(+) (comK) [Bacillus amyloliquefaciens strain RD7-7]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCCAAGCGGCAAGAATTCATGCTGTACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTACGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment