Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BARD7_RS03960 Genome accession   NZ_CP016913
Coordinates   831333..832124 (+) Length   263 a.a.
NCBI ID   WP_065980977.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 826333..837124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS03935 (BARD7_00800) - 828328..829212 (+) 885 WP_065980975.1 PhzF family phenazine biosynthesis isomerase -
  BARD7_RS03940 (BARD7_00801) - 829289..829873 (+) 585 WP_045507625.1 nitroreductase family protein -
  BARD7_RS03945 (BARD7_00802) - 829911..830102 (-) 192 WP_013351432.1 YfhD family protein -
  BARD7_RS03950 (BARD7_00803) - 830173..830283 (-) 111 WP_003223230.1 YfhE family protein -
  BARD7_RS03955 (BARD7_00804) - 830341..831240 (-) 900 WP_065980976.1 TIGR01777 family oxidoreductase -
  BARD7_RS03960 (BARD7_00805) recX 831333..832124 (+) 792 WP_065980977.1 recombination regulator RecX Regulator
  BARD7_RS03965 (BARD7_00806) - 832131..832445 (+) 315 WP_065980978.1 YfhH family protein -
  BARD7_RS03970 (BARD7_00807) - 832588..833781 (+) 1194 WP_076983258.1 MFS transporter -
  BARD7_RS03975 (BARD7_00808) - 833820..834212 (-) 393 WP_065980979.1 DUF2606 family protein -
  BARD7_RS03980 (BARD7_00809) - 834175..835086 (-) 912 WP_065980980.1 trypsin-like serine peptidase -
  BARD7_RS03985 - 835224..835376 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  BARD7_RS03990 (BARD7_00810) - 835500..835769 (+) 270 WP_013351439.1 YfhJ family protein -
  BARD7_RS03995 (BARD7_00811) - 835901..836428 (+) 528 WP_065980981.1 SH3 domain-containing protein -
  BARD7_RS04000 (BARD7_00812) - 836514..836849 (+) 336 WP_065980982.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30995.21 Da        Isoelectric Point: 6.2747

>NTDB_id=193601 BARD7_RS03960 WP_065980977.1 831333..832124(+) (recX) [Bacillus amyloliquefaciens strain RD7-7]
MPFITKISTQKKNTDRFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=193601 BARD7_RS03960 WP_065980977.1 831333..832124(+) (recX) [Bacillus amyloliquefaciens strain RD7-7]
GTGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGATCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTTCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GCCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAGAAAAAAGAAACACCTGAGATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGATGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATAAAGGAGACGCTCAGTGCGTTTACGTTTGACGAGCAGATACAGGAA
GCGCTGAAACATATCGGGAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAAATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment