Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S101267_RS15675 Genome accession   NZ_CP021505
Coordinates   3008969..3010099 (-) Length   376 a.a.
NCBI ID   WP_013353308.1    Uniprot ID   A0A9P1JJI8
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003969..3015099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS15650 (S101267_03140) - 3004184..3004852 (+) 669 WP_013353302.1 potassium channel family protein -
  S101267_RS15655 (S101267_03141) - 3004876..3005721 (-) 846 WP_013353303.1 glucosaminidase domain-containing protein -
  S101267_RS15660 (S101267_03142) hmpA 3005861..3007036 (-) 1176 WP_013353304.1 NO-inducible flavohemoprotein -
  S101267_RS15665 - 3007253..3007893 (+) 641 Protein_3027 cupin domain-containing protein -
  S101267_RS15670 (S101267_03144) - 3007953..3008276 (-) 324 WP_013353306.1 hypothetical protein -
  S101267_RS15675 (S101267_03147) rapC 3008969..3010099 (-) 1131 WP_013353308.1 tetratricopeptide repeat protein Regulator
  S101267_RS15680 (S101267_03148) - 3010487..3010690 (+) 204 WP_014470862.1 hypothetical protein -
  S101267_RS15685 (S101267_03149) - 3010993..3011784 (-) 792 WP_088030572.1 helix-turn-helix domain-containing protein -
  S101267_RS15690 (S101267_03150) - 3011921..3012127 (+) 207 WP_013351586.1 helix-turn-helix domain-containing protein -
  S101267_RS15695 (S101267_03151) - 3012187..3012522 (+) 336 WP_088030573.1 YolD-like family protein -
  S101267_RS15700 (S101267_03152) - 3012540..3013052 (-) 513 WP_088030574.1 hypothetical protein -
  S101267_RS15705 (S101267_03153) - 3013178..3013435 (-) 258 WP_088030575.1 holin -
  S101267_RS15710 (S101267_03154) - 3013456..3014394 (-) 939 WP_088030576.1 N-acetylmuramoyl-L-alanine amidase -
  S101267_RS15715 (S101267_03155) - 3014476..3014685 (-) 210 WP_013351581.1 BhlA/UviB family holin-like peptide -
  S101267_RS15720 (S101267_03156) - 3014689..3014877 (-) 189 WP_069473329.1 XkdX family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44372.86 Da        Isoelectric Point: 6.5099

>NTDB_id=193556 S101267_RS15675 WP_013353308.1 3008969..3010099(-) (rapC) [Bacillus amyloliquefaciens strain SRCM101267]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=193556 S101267_RS15675 WP_013353308.1 3008969..3010099(-) (rapC) [Bacillus amyloliquefaciens strain SRCM101267]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.591

100

0.449
  rapF Bacillus subtilis subsp. subtilis str. 168

40.633

100

0.41