Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   BEN76_RS02805 Genome accession   NZ_CP016896
Coordinates   595767..596390 (+) Length   207 a.a.
NCBI ID   WP_004938718.1    Uniprot ID   A0A1P8EFN6
Organism   Acinetobacter soli strain GFJ2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590767..601390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS02770 (BEN76_02770) kdsB 591291..592052 (+) 762 WP_076032175.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BEN76_RS02775 (BEN76_02775) - 592067..593053 (+) 987 WP_076032176.1 DNA polymerase III subunit delta' -
  BEN76_RS02780 (BEN76_02780) - 593056..593400 (+) 345 WP_004948143.1 PilZ domain-containing protein -
  BEN76_RS02785 (BEN76_02785) - 593416..594189 (+) 774 WP_076032177.1 TatD family hydrolase -
  BEN76_RS02790 (BEN76_02790) - 594228..594839 (+) 612 WP_076032178.1 TetR/AcrR family transcriptional regulator -
  BEN76_RS02795 (BEN76_02795) - 594849..595394 (+) 546 WP_004938724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BEN76_RS02800 (BEN76_02800) xcpV 595384..595770 (+) 387 WP_004948134.1 type II secretion system minor pseudopilin GspI Machinery gene
  BEN76_RS02805 (BEN76_02805) xcpW 595767..596390 (+) 624 WP_004938718.1 type II secretion system minor pseudopilin GspJ Machinery gene
  BEN76_RS02810 (BEN76_02810) gspK 596407..597375 (+) 969 WP_076032179.1 type II secretion system minor pseudopilin GspK -
  BEN76_RS02815 (BEN76_02815) - 597540..598136 (+) 597 WP_025095495.1 6-pyruvoyl trahydropterin synthase family protein -
  BEN76_RS02820 (BEN76_02820) ung 598191..598904 (+) 714 WP_076032180.1 uracil-DNA glycosylase -
  BEN76_RS02825 (BEN76_02825) - 598901..600025 (+) 1125 WP_004948124.1 enoyl-CoA hydratase/isomerase family protein -
  BEN76_RS02830 (BEN76_02830) tadA 600031..600543 (+) 513 WP_004938709.1 tRNA adenosine(34) deaminase TadA -
  BEN76_RS02835 (BEN76_02835) - 600644..601078 (+) 435 WP_076032181.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23793.43 Da        Isoelectric Point: 8.2901

>NTDB_id=193512 BEN76_RS02805 WP_004938718.1 595767..596390(+) (xcpW) [Acinetobacter soli strain GFJ2]
MKKRSGFTLVELLVAIAIFAVLSALGWKIFDYLIKTKERNQQHELQIFELQDAYQIILRDSLQLIPMTANINGQIRPALS
LSDTSLQFSKAGVSDPLKEGLAPYERIEYRYVPSEKMVYRLKYRSLNITNNEQPESSVLLKNVDQFRITVLNPQILNQWP
EAGADLSQPTSMQRLPRGLKIDVQRSDVNYEWIFPLLDTQFMSVNGS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=193512 BEN76_RS02805 WP_004938718.1 595767..596390(+) (xcpW) [Acinetobacter soli strain GFJ2]
ATGAAAAAAAGATCGGGATTTACGCTGGTTGAGCTCTTGGTGGCGATTGCGATTTTTGCGGTTCTTTCTGCATTGGGCTG
GAAAATTTTTGACTATCTGATTAAGACCAAGGAACGCAACCAGCAACATGAGCTTCAGATTTTTGAGTTGCAAGATGCCT
ATCAAATTATACTTCGAGATTCACTTCAGCTCATCCCGATGACGGCGAATATCAACGGACAAATCCGGCCTGCACTCAGC
CTGAGTGATACCAGTTTGCAATTTAGCAAGGCAGGAGTGAGTGATCCGCTCAAAGAGGGCCTCGCGCCATACGAACGTAT
TGAATATCGTTATGTACCCAGTGAAAAGATGGTATATCGGTTGAAATACCGTAGCCTGAATATCACCAACAACGAGCAGC
CAGAATCGAGTGTACTGCTCAAAAATGTAGATCAATTTCGAATAACCGTGTTGAATCCGCAGATACTCAACCAGTGGCCT
GAGGCGGGTGCAGATTTAAGTCAGCCTACCAGCATGCAGCGCCTGCCGCGAGGGCTTAAGATTGATGTACAGCGTTCAGA
TGTAAACTATGAATGGATTTTTCCGCTTTTAGATACTCAATTTATGAGTGTAAACGGATCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EFN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.204

94.686

0.57

Multiple sequence alignment