Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   BFG52_RS13695 Genome accession   NZ_CP016895
Coordinates   3067910..3068725 (-) Length   271 a.a.
NCBI ID   WP_407639213.1    Uniprot ID   -
Organism   Acinetobacter larvae strain BRTC-1     
Function   assists with secretin assembly and localization (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3062910..3073725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFG52_RS13675 (BFG52_13675) - 3063948..3064652 (-) 705 WP_067557385.1 tetratricopeptide repeat protein -
  BFG52_RS13680 (BFG52_13680) hisS 3064686..3065981 (-) 1296 WP_067557387.1 histidine--tRNA ligase -
  BFG52_RS13685 (BFG52_13685) ispG 3065978..3067093 (-) 1116 WP_067557389.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  BFG52_RS13690 (BFG52_13690) - 3067125..3067919 (-) 795 WP_067557392.1 helix-turn-helix domain-containing protein -
  BFG52_RS13695 (BFG52_13695) pilF 3067910..3068725 (-) 816 WP_407639213.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  BFG52_RS13700 (BFG52_13700) rlmN 3068765..3070000 (-) 1236 WP_067557395.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BFG52_RS13705 (BFG52_13705) ndk 3070150..3070581 (-) 432 WP_067557398.1 nucleoside-diphosphate kinase -
  BFG52_RS13710 (BFG52_13710) iscX 3070676..3070876 (-) 201 WP_067557400.1 Fe-S cluster assembly protein IscX -
  BFG52_RS13715 (BFG52_13715) - 3070965..3071516 (-) 552 WP_067557403.1 phosphatase PAP2 family protein -
  BFG52_RS13720 (BFG52_13720) - 3071676..3072959 (-) 1284 WP_067557406.1 glycosyltransferase family 1 protein -
  BFG52_RS13725 (BFG52_13725) - 3073142..3073465 (+) 324 WP_067557409.1 SEL1-like repeat protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30689.91 Da        Isoelectric Point: 9.3020

>NTDB_id=193499 BFG52_RS13695 WP_407639213.1 3067910..3068725(-) (pilF) [Acinetobacter larvae strain BRTC-1]
MNQALTLSRIAGFAIALGLCGVQGCHHNPRATLGAKDPEKAAKIRVQMAAEYIRQGDLDAAKRALDQALLTAPKDPNANM
MMGVLLQQDGSPEHLQQAEQYFLKAIARDSNNPQLHNNYGTYLFQIKRYDQAIAQLQLAAQHLGYEQRYRALENLGRIYL
LQQNFALAEKNFKQALQVRPDSSISMLELSELHYLQHNSVAATAFYEQYVQKTGHNNQSARALWLGIRLARANHQQNQLQ
VLINQLAVAFPESPEYQRYLKLQYSTEAVWK

Nucleotide


Download         Length: 816 bp        

>NTDB_id=193499 BFG52_RS13695 WP_407639213.1 3067910..3068725(-) (pilF) [Acinetobacter larvae strain BRTC-1]
TTGAACCAAGCGTTAACTTTAAGTCGTATTGCAGGGTTTGCAATCGCTTTAGGTCTATGCGGTGTTCAGGGATGTCATCA
TAACCCGCGCGCGACATTAGGGGCGAAAGACCCAGAAAAAGCGGCTAAAATTCGTGTGCAGATGGCTGCCGAGTATATTC
GCCAAGGGGATTTAGATGCTGCGAAACGAGCCTTAGACCAAGCCTTGCTTACAGCACCTAAAGATCCCAATGCCAATATG
ATGATGGGCGTTTTATTACAACAAGACGGTAGCCCCGAACATTTGCAACAAGCAGAACAATATTTTTTGAAGGCGATTGC
GCGAGATAGCAATAACCCTCAGCTACATAATAATTACGGTACTTATCTGTTTCAGATTAAACGCTATGATCAAGCCATTG
CACAACTTCAGCTCGCAGCACAGCACTTGGGCTATGAACAGCGTTATCGTGCATTGGAAAATCTGGGACGCATTTATTTG
CTACAACAAAACTTCGCTTTGGCTGAAAAAAACTTTAAACAAGCCTTGCAAGTTAGACCCGATTCTAGTATTTCAATGTT
AGAGTTGTCAGAACTACATTATTTGCAGCACAATAGTGTCGCTGCGACCGCATTCTATGAACAATATGTTCAGAAAACAG
GTCATAATAATCAGAGTGCTCGGGCACTTTGGTTGGGCATTCGTTTAGCGCGTGCTAATCATCAGCAGAATCAGTTGCAA
GTGTTGATTAATCAGCTTGCAGTTGCTTTTCCTGAGAGTCCAGAATATCAACGTTATCTAAAATTACAGTACAGTACTGA
GGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(150-181)

Tetratricopeptide repeat (TPR_14)

(45-84)

Tetratricopeptide repeat (TPR_17)

(102-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baylyi ADP1

60.15

98.155

0.59
  pilF Acinetobacter baumannii D1279779

59.615

95.941

0.572

Multiple sequence alignment