Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BSHJ0_RS19145 Genome accession   NZ_CP016894
Coordinates   3646112..3646834 (-) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus subtilis strain HJ0-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3641112..3651834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS19110 (BSHJ0_03765) fliW 3641252..3641683 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  BSHJ0_RS19115 (BSHJ0_03766) yviE 3641704..3642279 (-) 576 WP_014481045.1 DUF6470 family protein -
  BSHJ0_RS19120 (BSHJ0_03767) flgL 3642326..3643222 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  BSHJ0_RS19125 flgK 3643233..3644755 (-) 1523 Protein_3719 flagellar hook-associated protein FlgK -
  BSHJ0_RS19130 (BSHJ0_03770) flgN 3644774..3645256 (-) 483 WP_003227999.1 flagellar protein FlgN -
  BSHJ0_RS19135 (BSHJ0_03771) flgM 3645272..3645538 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSHJ0_RS19140 (BSHJ0_03772) yvyF 3645619..3646038 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BSHJ0_RS19145 (BSHJ0_03773) comFC 3646112..3646834 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  BSHJ0_RS19150 (BSHJ0_03774) comFB 3646798..3647094 (-) 297 WP_015483764.1 late competence protein ComFB -
  BSHJ0_RS19155 (BSHJ0_03775) comFA 3647154..3648545 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  BSHJ0_RS19160 (BSHJ0_03776) fakBA 3648651..3649496 (-) 846 WP_003244125.1 DegV family protein -
  BSHJ0_RS19165 (BSHJ0_03777) degU 3649594..3650282 (-) 689 Protein_3727 two-component system response regulator DegU -
  BSHJ0_RS19170 (BSHJ0_03778) degS 3650365..3651522 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=193476 BSHJ0_RS19145 WP_038427947.1 3646112..3646834(-) (comFC) [Bacillus subtilis strain HJ0-6]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=193476 BSHJ0_RS19145 WP_038427947.1 3646112..3646834(-) (comFC) [Bacillus subtilis strain HJ0-6]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment