Detailed information NTG0193463

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: S101267_RS02735
• Genome accession: NZ_CP021505
• Coordinates: 510796..511971 (+)
• Length: 391 a.a.
• NCBI ID: WP_065118507.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM101267
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 505796..516971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101267_RS02705 (S101267_00538)	-	506020..506526 (+)	507	WP_065118502.1	hypothetical protein	-
S101267_RS02710 (S101267_00539)	-	506587..506967 (+)	381	WP_065118514.1	cystatin-like fold lipoprotein	-
S101267_RS02715 (S101267_00540)	-	507056..507781 (+)	726	WP_065118503.1	hypothetical protein	-
S101267_RS02720 (S101267_00542)	-	508228..508491 (-)	264	WP_065118504.1	hypothetical protein	-
S101267_RS02725 (S101267_00543)	-	508503..509252 (-)	750	WP_065118505.1	PmeII family type II restriction endonuclease	-
S101267_RS02730 (S101267_00544)	-	509304..510434 (-)	1131	WP_065118506.1	DNA cytosine methyltransferase	-
S101267_RS02735 (S101267_00545)	rapC	510796..511971 (+)	1176	WP_065118507.1	Rap family tetratricopeptide repeat protein	Regulator
S101267_RS02740 (S101267_00547)	-	512254..512712 (-)	459	WP_065118508.1	SMI1/KNR4 family protein	-
S101267_RS02745 (S101267_00548)	-	512725..514521 (-)	1797	WP_065118509.1	T7SS effector LXG polymorphic toxin	-
S101267_RS02750 (S101267_00549)	-	515262..515699 (+)	438	WP_013351105.1	hypothetical protein	-
S101267_RS02755 (S101267_00550)	-	515820..516323 (-)	504	WP_013351106.1	RrF2 family transcriptional regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 46366.73 Da
• Isoelectric Point: 4.6626

>NTDB_id=193463 S101267_RS02735 WP_065118507.1 510796..511971(+) (rapC) [Bacillus amyloliquefaciens strain SRCM101267]
MQQGFLKRSKIPYDLVTKKLNAWYMAIKSDLVEEAERIKVEAEAELANMEENQDALLYYQLLEFRHEIMLSYMKSKNMDS
LENAYETLREIESQGQLTGMLEYYFYFFMGMYEFRRKELTTAISAYRIAEKKLFEVEDEIERAEFFFKVAHVYYYMKQTY
FSLNYANRALKIFKQYDAYAVQTIRCQNIIAGNLIDSLDYERALDVFRDTLRIAESVGADYLIGMSRMNIGICYDYIGEY
DKAAEYLQTSLEFFEKTEHVFLTKTLFNIVNVKTKQEALAEALLYLKKGQSVAKKYGDSEYEAKFKIIEGLYFSDDEYSL
IEEAFSYLNEKRMFGDIENFAIRVADYFYEEGDLSRSNEYYRLSIEARRKIKKGEIINEDQPDFVYSHFIG

Nucleotide

• Length: 1176 bp

>NTDB_id=193463 S101267_RS02735 WP_065118507.1 510796..511971(+) (rapC) [Bacillus amyloliquefaciens strain SRCM101267]
TTGCAGCAGGGTTTTTTAAAGAGAAGCAAAATTCCATATGATTTGGTGACAAAAAAACTAAATGCTTGGTACATGGCGAT
AAAGAGTGATTTGGTTGAGGAAGCAGAACGAATTAAAGTGGAAGCTGAAGCTGAACTAGCTAATATGGAAGAAAATCAAG
ATGCTCTATTATATTATCAGCTGCTAGAATTCAGACATGAAATCATGTTGAGCTATATGAAGTCAAAGAATATGGATAGC
TTGGAAAATGCATATGAGACGCTAAGGGAAATTGAATCCCAAGGTCAATTAACCGGTATGTTGGAGTATTATTTTTATTT
CTTTATGGGAATGTATGAATTTAGAAGGAAAGAACTGACTACAGCAATAAGTGCTTATCGAATCGCGGAGAAAAAGTTGT
TTGAGGTGGAAGATGAAATTGAAAGGGCGGAGTTCTTCTTCAAAGTCGCCCATGTGTATTACTATATGAAACAAACTTAT
TTTTCTTTAAATTATGCCAATCGGGCGCTTAAAATTTTCAAACAGTACGATGCGTATGCAGTTCAAACCATAAGATGTCA
AAATATAATTGCTGGTAATTTAATTGACTCTTTGGATTATGAAAGAGCACTAGATGTGTTTAGAGACACATTGCGTATAG
CTGAATCAGTTGGAGCGGATTACTTGATTGGTATGTCTCGAATGAATATTGGTATTTGTTATGATTATATAGGTGAATAT
GATAAAGCAGCTGAGTATTTACAAACGTCATTAGAATTTTTCGAAAAGACTGAACACGTCTTTTTGACAAAAACATTGTT
CAATATTGTAAATGTTAAAACGAAACAGGAAGCTCTGGCTGAAGCCTTACTTTATTTAAAAAAGGGGCAATCTGTCGCAA
AGAAATACGGAGATTCAGAATATGAAGCAAAGTTTAAGATTATAGAAGGACTTTATTTTAGTGATGATGAATATTCTTTA
ATTGAAGAGGCCTTTTCGTATCTGAATGAAAAAAGAATGTTCGGAGACATTGAAAATTTTGCAATTAGAGTAGCGGATTA
TTTTTATGAAGAAGGGGATTTATCACGTTCCAATGAGTATTATCGACTGAGTATTGAAGCGAGACGAAAAATAAAAAAAG
GGGAGATTATTAATGAAGATCAGCCGGACTTTGTTTACAGTCATTTTATTGGGTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (10-70)

• Tetratricopeptide repeat (TPR_12) (199-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	38.4	95.908	0.368