Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSHJ0_RS12120 Genome accession   NZ_CP016894
Coordinates   2332460..2333080 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain HJ0-6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2327460..2338080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS12080 (BSHJ0_02376) ptsA 2328588..2329094 (-) 507 WP_038428153.1 PTS sugar transporter subunit IIA -
  BSHJ0_RS12085 (BSHJ0_02377) ypqA 2329232..2329651 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  BSHJ0_RS12090 (BSHJ0_02378) sppG 2329672..2330049 (-) 378 WP_015251832.1 YppG family protein -
  BSHJ0_RS12095 (BSHJ0_02379) yppF 2330237..2330425 (+) 189 WP_003230690.1 YppF family protein -
  BSHJ0_RS12100 (BSHJ0_02380) yppE 2330467..2330838 (-) 372 WP_029726786.1 YppE family protein -
  BSHJ0_RS12105 (BSHJ0_02381) yppD 2330884..2331129 (-) 246 WP_015251831.1 YppD family protein -
  BSHJ0_RS12110 (BSHJ0_02382) sspM 2331328..2331432 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BSHJ0_RS12115 (BSHJ0_02383) yppC 2331457..2332419 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  BSHJ0_RS12120 (BSHJ0_02384) recU 2332460..2333080 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BSHJ0_RS12125 (BSHJ0_02385) ponA 2333102..2335846 (+) 2745 WP_029726784.1 transglycosylase domain-containing protein -
  BSHJ0_RS12130 (BSHJ0_02386) ypoC 2335922..2336416 (-) 495 WP_029726783.1 YpoC family protein -
  BSHJ0_RS12135 (BSHJ0_02387) nth 2336413..2337072 (-) 660 WP_029726782.1 endonuclease III -
  BSHJ0_RS12140 (BSHJ0_02388) dnaD 2337091..2337789 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=193446 BSHJ0_RS12120 WP_004399067.1 2332460..2333080(+) (recU) [Bacillus subtilis strain HJ0-6]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=193446 BSHJ0_RS12120 WP_004399067.1 2332460..2333080(+) (recU) [Bacillus subtilis strain HJ0-6]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment