Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Thert_RS14790 Genome accession   NZ_CP016893
Coordinates   384732..385055 (-) Length   107 a.a.
NCBI ID   WP_349290105.1    Uniprot ID   -
Organism   Thermoanaerobacterium thermosaccharolyticum strain TG57     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379732..390055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thert_RS01890 (Thert_00431) tpiA 380482..381228 (-) 747 WP_094044675.1 triose-phosphate isomerase -
  Thert_RS01895 (Thert_00432) - 381242..382423 (-) 1182 WP_094044677.1 phosphoglycerate kinase -
  Thert_RS01900 (Thert_00434) gap 382486..383493 (-) 1008 WP_013298469.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  Thert_RS01905 (Thert_00436) - 383544..384566 (-) 1023 WP_094044679.1 sugar-binding domain-containing protein -
  Thert_RS14790 rpoN/rpoN1 384732..385055 (-) 324 WP_349290105.1 hypothetical protein Machinery gene
  Thert_RS01910 (Thert_00438) rpoN 385030..386082 (-) 1053 WP_237268802.1 RNA polymerase factor sigma-54 -
  Thert_RS01915 (Thert_00439) - 386204..386476 (-) 273 WP_013298472.1 acylphosphatase -
  Thert_RS01920 (Thert_00440) - 386576..387400 (-) 825 WP_013298473.1 Cof-type HAD-IIB family hydrolase -
  Thert_RS01925 (Thert_00441) - 387603..388025 (+) 423 WP_094044683.1 Fur family transcriptional regulator -
  Thert_RS01930 (Thert_00442) - 388049..389536 (-) 1488 WP_094044685.1 VanW family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12186.95 Da        Isoelectric Point: 8.4048

>NTDB_id=193408 Thert_RS14790 WP_349290105.1 384732..385055(-) (rpoN/rpoN1) [Thermoanaerobacterium thermosaccharolyticum strain TG57]
MAEIVGVHESTVSRAINGKYVDTPLGVFEIKYFFQNGIENGDGEKFSQEMIKEMIKQLISDEDPKKTLSDQKIAEILVSQ
GITISRRTVAKYREEMNIPSSGKRKRY

Nucleotide


Download         Length: 324 bp        

>NTDB_id=193408 Thert_RS14790 WP_349290105.1 384732..385055(-) (rpoN/rpoN1) [Thermoanaerobacterium thermosaccharolyticum strain TG57]
ATAGCAGAAATCGTTGGTGTTCATGAATCAACCGTAAGCAGAGCAATAAATGGGAAGTATGTAGATACGCCTTTAGGTGT
ATTTGAAATAAAATACTTTTTCCAAAACGGTATTGAAAATGGCGATGGTGAAAAATTTTCGCAGGAAATGATAAAAGAGA
TGATAAAGCAGTTGATAAGCGATGAGGACCCTAAAAAAACATTAAGCGATCAAAAGATTGCCGAAATTCTTGTTAGCCAA
GGAATCACGATATCAAGAAGAACTGTCGCAAAATACAGAGAAGAGATGAATATTCCATCATCAGGCAAGAGAAAGAGATA
TTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.524

98.131

0.486

Multiple sequence alignment