Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   S100757_RS09515 Genome accession   NZ_CP021499
Coordinates   1809688..1810119 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804688..1815119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS09495 (S100757_01880) spoVS 1805250..1805510 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  S100757_RS09500 (S100757_01881) tdh 1805775..1806818 (+) 1044 WP_046160417.1 L-threonine 3-dehydrogenase -
  S100757_RS09505 (S100757_01882) kbl 1806831..1808009 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  S100757_RS09510 (S100757_01883) miaB 1808157..1809686 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  S100757_RS09515 (S100757_01884) ymcA 1809688..1810119 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  S100757_RS09520 (S100757_01885) cotE 1810381..1810926 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  S100757_RS09525 (S100757_01886) hexA 1811059..1813635 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=193364 S100757_RS09515 WP_003231834.1 1809688..1810119(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=193364 S100757_RS09515 WP_003231834.1 1809688..1810119(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SRCM100757]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1