Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   S101444_RS20415 Genome accession   NZ_CP021498
Coordinates   3857742..3858431 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3852742..3863431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS20395 (S101444_04057) yxeA 3853647..3853994 (-) 348 WP_003227084.1 YxeA family protein -
  S101444_RS20400 (S101444_04058) yxdM 3854008..3855876 (-) 1869 WP_087614826.1 ABC transporter permease YxdM -
  S101444_RS20405 (S101444_04059) yxdL 3855851..3856624 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  S101444_RS20410 (S101444_04060) yxdK 3856768..3857745 (-) 978 WP_015250855.1 two-component system sensor histidine kinase YxdK -
  S101444_RS20415 (S101444_04061) braR 3857742..3858431 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  S101444_RS20420 (S101444_04062) iolJ 3858540..3859412 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  S101444_RS20425 (S101444_04063) iolI 3859433..3860269 (-) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  S101444_RS20430 (S101444_04064) iolH 3860355..3861224 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  S101444_RS20435 (S101444_04065) iolG 3861244..3862278 (-) 1035 WP_015250851.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=193285 S101444_RS20415 WP_003243527.1 3857742..3858431(-) (braR) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=193285 S101444_RS20415 WP_003243527.1 3857742..3858431(-) (braR) [Bacillus subtilis subsp. subtilis strain SRCM101444]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAACTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment