Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BEN15_RS01105 Genome accession   NZ_CP016877
Coordinates   223112..223843 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 218112..228843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS01080 (BEN15_01085) - 219177..220358 (+) 1182 WP_065972519.1 NAD(P)/FAD-dependent oxidoreductase -
  BEN15_RS01090 (BEN15_01095) trmB 220578..221219 (-) 642 WP_065972520.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BEN15_RS01095 (BEN15_01100) ccrZ 221229..222020 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  BEN15_RS01100 (BEN15_01105) pptB 222078..223112 (-) 1035 WP_418346455.1 ABC transporter permease Regulator
  BEN15_RS01105 (BEN15_01110) pptA 223112..223843 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  BEN15_RS01110 (BEN15_01115) - 223908..224327 (+) 420 WP_065972522.1 HIT family protein -
  BEN15_RS01115 (BEN15_01120) - 224324..224632 (+) 309 WP_065972523.1 hypothetical protein -
  BEN15_RS11460 - 224674..224832 (-) 159 WP_231107169.1 hypothetical protein -
  BEN15_RS11465 - 225012..225401 (-) 390 WP_231107170.1 hypothetical protein -
  BEN15_RS01125 (BEN15_01130) - 225420..226055 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  BEN15_RS11975 - 226074..226199 (-) 126 WP_011681534.1 hypothetical protein -
  BEN15_RS01130 (BEN15_01135) - 226624..228729 (-) 2106 WP_065972524.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=193281 BEN15_RS01105 WP_002951673.1 223112..223843(-) (pptA) [Streptococcus thermophilus strain KLDS 3.1003]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=193281 BEN15_RS01105 WP_002951673.1 223112..223843(-) (pptA) [Streptococcus thermophilus strain KLDS 3.1003]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment