Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   BE846_RS01355 Genome accession   NZ_CP016876
Coordinates   301479..301793 (-) Length   104 a.a.
NCBI ID   WP_027220533.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI337     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296479..306793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE846_RS01330 (BE846_01330) - 296905..297405 (-) 501 WP_011214243.1 hypothetical protein -
  BE846_RS01335 (BE846_01335) - 297896..298756 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  BE846_RS01340 (BE846_01340) - 298880..300070 (-) 1191 WP_070321972.1 murein transglycosylase A -
  BE846_RS01345 (BE846_01345) lpp1976 300180..300737 (-) 558 WP_061637207.1 hypothetical protein Machinery gene
  BE846_RS01350 (BE846_01350) lpp1977 300734..301540 (-) 807 WP_061637208.1 PilW family protein Machinery gene
  BE846_RS01355 (BE846_01355) lpp1978 301479..301793 (-) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BE846_RS01360 (BE846_01360) hisC 301953..303062 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  BE846_RS01365 (BE846_01365) - 303099..303440 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BE846_RS01370 (BE846_01370) secF 303630..304547 (-) 918 WP_011215964.1 protein translocase subunit SecF -
  BE846_RS01375 (BE846_01375) secD 304560..306416 (-) 1857 WP_011215965.1 protein translocase subunit SecD -
  BE846_RS01380 (BE846_01380) yajC 306438..306773 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12249.39 Da        Isoelectric Point: 10.0591

>NTDB_id=193240 BE846_RS01355 WP_027220533.1 301479..301793(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain FFI337]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=193240 BE846_RS01355 WP_027220533.1 301479..301793(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain FFI337]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

100

100

1
  lpp1978 Legionella pneumophila str. Paris

98.077

100

0.981

Multiple sequence alignment