Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   S101444_RS11865 Genome accession   NZ_CP021498
Coordinates   2221132..2222622 (-) Length   496 a.a.
NCBI ID   WP_046160518.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216132..2227622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS11835 (S101444_02352) gudB 2216277..2217551 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  S101444_RS11840 (S101444_02353) mecB 2217707..2218291 (-) 585 WP_046160514.1 genetic competence negative regulator -
  S101444_RS11845 (S101444_02354) ypbG 2218450..2219229 (-) 780 WP_046160515.1 metallophosphoesterase -
  S101444_RS11850 (S101444_02355) ypbF 2219315..2219758 (-) 444 WP_046160516.1 YpbF family protein -
  S101444_RS11855 (S101444_02356) claE 2219821..2220552 (-) 732 WP_087614599.1 LysM peptidoglycan-binding domain-containing protein -
  S101444_RS11860 (S101444_02357) ypbD 2220503..2221090 (-) 588 WP_283933531.1 CPBP family intramembrane glutamic endopeptidase -
  S101444_RS11865 (S101444_02358) recS 2221132..2222622 (-) 1491 WP_046160518.1 ATP-dependent DNA helicase RecQ Machinery gene
  S101444_RS11870 (S101444_02359) gmmB 2222615..2223673 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  S101444_RS11875 (S101444_02360) fdxA 2223939..2224187 (+) 249 WP_003225461.1 ferredoxin -
  S101444_RS11880 (S101444_02361) fmnP 2224227..2224799 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  S101444_RS11885 (S101444_02362) serA 2225296..2226873 (+) 1578 WP_046160519.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56477.04 Da        Isoelectric Point: 6.5039

>NTDB_id=193224 S101444_RS11865 WP_046160518.1 2221132..2222622(-) (recS) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQYAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=193224 S101444_RS11865 WP_046160518.1 2221132..2222622(-) (recS) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAACAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAGGCTTTACAGTCTCCATATGTGTTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACTGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTCGA
GCTGCAGTATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment