Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BE844_RS13525 Genome accession   NZ_CP016873
Coordinates   3021810..3022358 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3016810..3027358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE844_RS13515 (BE844_13515) ravI 3019318..3020325 (-) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -
  BE844_RS13520 (BE844_13520) pilM 3020742..3021806 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  BE844_RS13525 (BE844_13525) pilN 3021810..3022358 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  BE844_RS13530 (BE844_13530) pilO 3022372..3022971 (+) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  BE844_RS13535 (BE844_13535) pilP 3022968..3023552 (+) 585 WP_027266404.1 pilus assembly protein PilP Machinery gene
  BE844_RS13540 (BE844_13540) pilQ 3023556..3025652 (+) 2097 WP_011215098.1 type IV pilus secretin PilQ Machinery gene
  BE844_RS13545 (BE844_13545) aroK 3026098..3026625 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=193183 BE844_RS13525 WP_010946663.1 3021810..3022358(+) (pilN) [Legionella pneumophila subsp. pneumophila strain FFI105]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=193183 BE844_RS13525 WP_010946663.1 3021810..3022358(+) (pilN) [Legionella pneumophila subsp. pneumophila strain FFI105]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTCTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment