Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   S101444_RS03925 Genome accession   NZ_CP021498
Coordinates   754117..755247 (+) Length   376 a.a.
NCBI ID   WP_017695616.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 749117..760247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS03905 (S101444_00770) yeeF 749206..751215 (-) 2010 WP_087614407.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  S101444_RS03910 (S101444_00771) - 751381..751719 (+) 339 WP_024571793.1 hypothetical protein -
  S101444_RS03915 (S101444_00772) - 751732..752652 (+) 921 WP_024571794.1 DUF5655 domain-containing protein -
  S101444_RS03920 (S101444_00773) - 752809..753969 (+) 1161 WP_024571795.1 lysozyme inhibitor LprI family protein -
  S101444_RS03925 (S101444_00774) rapC 754117..755247 (+) 1131 WP_017695616.1 response regulator aspartate phosphatase RapH Regulator
  S101444_RS03930 (S101444_00775) phrH 755237..755410 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  S101444_RS03935 (S101444_00776) yeeI 755570..756289 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  S101444_RS03940 (S101444_00777) yeeK 756423..756869 (+) 447 WP_087614409.1 spore coat protein YeeK -
  S101444_RS03945 (S101444_00778) yezE 756984..757568 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  S101444_RS03950 (S101444_00779) yesE 757647..758090 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  S101444_RS03955 (S101444_00780) yesF 758087..758952 (+) 866 Protein_725 NmrA family NAD(P)-binding protein -
  S101444_RS03960 (S101444_00781) cotJA 759082..759330 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  S101444_RS03965 (S101444_00782) cotJB 759314..759577 (+) 264 WP_003219491.1 spore coat protein CotJB -
  S101444_RS03970 (S101444_00783) cotJC 759592..760161 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.35 Da        Isoelectric Point: 5.8599

>NTDB_id=193167 S101444_RS03925 WP_017695616.1 754117..755247(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=193167 S101444_RS03925 WP_017695616.1 754117..755247(+) (rapC) [Bacillus subtilis subsp. subtilis strain SRCM101444]
TTGAGTCAAGCCATACCGTCTTCGCGTGTGGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAACTTTTGGAAACAATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404