Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   BE843_RS12750 Genome accession   NZ_CP016872
Coordinates   2818025..2819287 (-) Length   420 a.a.
NCBI ID   WP_011216388.1    Uniprot ID   Q5WTU5
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2813025..2824287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS12735 (BE843_12735) dupB 2813198..2814391 (+) 1194 WP_080477675.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -
  BE843_RS12740 (BE843_12740) sdjA 2814462..2816885 (+) 2424 WP_070322340.1 Dot/Icm T4SS effector SdjA -
  BE843_RS12745 (BE843_12745) - 2817282..2817977 (+) 696 WP_070322341.1 iron-containing redox enzyme family protein -
  BE843_RS12750 (BE843_12750) lqsT 2818025..2819287 (-) 1263 WP_011216388.1 sensor histidine kinase Regulator
  BE843_RS12755 (BE843_12755) mesI 2819682..2820569 (-) 888 WP_080477674.1 Dot/Icm T4SS metaeffector MesI -
  BE843_RS12760 (BE843_12760) ceg32 2820571..2823399 (-) 2829 WP_070322343.1 Dot/Icm T4SS effector Ceg32/SidI -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 48598.99 Da        Isoelectric Point: 7.9744

>NTDB_id=193144 BE843_RS12750 WP_011216388.1 2818025..2819287(-) (lqsT) [Legionella pneumophila subsp. pneumophila strain FFI104]
MQRLKNIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRQLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALVLLVSGVGLAFFHFYILSNNQFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFAIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKDGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=193144 BE843_RS12750 WP_011216388.1 2818025..2819287(-) (lqsT) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGCAAAGGTTAAAAAATATATTTACTGCAATTTACCAATATTTATTAAAAGAAACTGAAGATGCAAGCCACCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGACAGAAG
AATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAGACAATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTCTTCTCTTTTGTTTACCTTACTTTTTTGCTTATTTGACTCTCATAAACAATGG
CTCAACTCTTTGGCTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTAGTCTCCAGTGTGTTGGGAGCTCTTGTAT
TGCTTGTATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCAGTTTGTCTATATCCCAGGAACC
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCTTTGTTTGCACGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCAGTATTT
ATTTACAAGCGGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAAAATTTA
AGCAAAATTACTCGCGGTATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAAATTAGA
TACCAGTACATTTGCGATTTATTCCATCAAAAAATTACTCAAGGCGTCTTTAGAAGAATACCCTTTCAAAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTGATTTCT
TCTATTCTGGCAGAAAAGATGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCGTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5WTU5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

99.048

100

0.99


Multiple sequence alignment