Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BE843_RS05260 Genome accession   NZ_CP016872
Coordinates   1165176..1165724 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160176..1170724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS05240 (BE843_05240) aroK 1160909..1161436 (-) 528 WP_010946667.1 shikimate kinase AroK -
  BE843_RS05245 (BE843_05245) pilQ 1161882..1163978 (-) 2097 WP_011215098.1 type IV pilus secretin PilQ Machinery gene
  BE843_RS05250 (BE843_05250) pilP 1163982..1164566 (-) 585 WP_027266404.1 pilus assembly protein PilP Machinery gene
  BE843_RS05255 (BE843_05255) pilO 1164563..1165162 (-) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  BE843_RS05260 (BE843_05260) pilN 1165176..1165724 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  BE843_RS05265 (BE843_05265) pilM 1165728..1166792 (-) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  BE843_RS05270 (BE843_05270) ravI 1167209..1168216 (+) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=193129 BE843_RS05260 WP_010946663.1 1165176..1165724(-) (pilN) [Legionella pneumophila subsp. pneumophila strain FFI104]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=193129 BE843_RS05260 WP_010946663.1 1165176..1165724(-) (pilN) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTCTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment