Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCL28_RS09480 Genome accession   NZ_CP021454
Coordinates   1902777..1903253 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain H105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897777..1908253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCL28_RS09435 (CCL28_09435) yeeA 1898335..1899393 (+) 1059 WP_001200889.1 FUSC family protein -
  CCL28_RS09440 (CCL28_09440) tmaR 1899565..1899894 (+) 330 WP_000450409.1 DUF496 family protein -
  CCL28_RS27700 (CCL28_09445) - 1899995..1900177 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  CCL28_RS27830 (CCL28_09450) - 1900240..1900377 (+) 138 Protein_1762 transposase domain-containing protein -
  CCL28_RS26760 - 1900666..1900758 (-) 93 Protein_1763 DUF957 domain-containing protein -
  CCL28_RS09455 (CCL28_09455) yeeW 1900792..1900986 (-) 195 WP_000988600.1 DUF5983 family protein -
  CCL28_RS09460 (CCL28_09460) cbtA 1900983..1901357 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CCL28_RS09465 (CCL28_09465) cbeA 1901446..1901814 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCL28_RS09470 (CCL28_09470) - 1901830..1902474 (-) 645 WP_000086752.1 hypothetical protein -
  CCL28_RS09475 (CCL28_09475) yeeT 1902493..1902714 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CCL28_RS09480 (CCL28_09480) radC 1902777..1903253 (-) 477 WP_001186200.1 JAB domain-containing protein Machinery gene
  CCL28_RS09485 (CCL28_09485) - 1903269..1903742 (-) 474 WP_001542276.1 antirestriction protein -
  CCL28_RS09490 (CCL28_09490) - 1903836..1904081 (-) 246 WP_001164966.1 hypothetical protein -
  CCL28_RS09495 (CCL28_09495) - 1904081..1904899 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  CCL28_RS09505 (CCL28_09505) - 1905120..1905530 (-) 411 WP_000846703.1 hypothetical protein -
  CCL28_RS09510 (CCL28_09510) - 1905546..1905896 (-) 351 Protein_1774 hypothetical protein -
  CCL28_RS09515 (CCL28_09515) istB 1905979..1906725 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=193095 CCL28_RS09480 WP_001186200.1 1902777..1903253(-) (radC) [Escherichia coli strain H105]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=193095 CCL28_RS09480 WP_001186200.1 1902777..1903253(-) (radC) [Escherichia coli strain H105]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment