Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JG10_RS14385 Genome accession   NZ_CP021380
Coordinates   2997537..2998046 (-) Length   169 a.a.
NCBI ID   WP_019726271.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CCBH4851     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2992537..3003046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG10_RS14360 (AL347_32400) - 2992641..2992850 (-) 210 WP_019726277.1 hypothetical protein -
  JG10_RS14365 (AL347_32406) - 2992912..2994969 (-) 2058 WP_175365184.1 ParB/RepB/Spo0J family partition protein -
  JG10_RS14370 (AL347_32409) - 2995034..2995858 (-) 825 WP_025981539.1 DUF932 domain-containing protein -
  JG10_RS14375 (AL347_32420) - 2996559..2996837 (-) 279 WP_019726273.1 hypothetical protein -
  JG10_RS14380 (AL347_32425) - 2996903..2997253 (-) 351 WP_019726272.1 DUF2958 domain-containing protein -
  JG10_RS14385 (AL347_32430) radC 2997537..2998046 (-) 510 WP_019726271.1 DNA repair protein RadC Machinery gene
  JG10_RS14390 (AL347_32435) - 2998411..2999475 (-) 1065 WP_019726270.1 PDDEXK nuclease domain-containing protein -
  JG10_RS14395 (AL347_32440) - 2999472..3000671 (-) 1200 WP_019726269.1 site-specific integrase -
  JG10_RS14400 (AL347_32445) - 3000934..3001152 (-) 219 WP_003089862.1 hypothetical protein -
  JG10_RS14405 (AL347_32450) - 3001515..3002861 (+) 1347 WP_003109544.1 OprD family porin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18488.99 Da        Isoelectric Point: 6.2902

>NTDB_id=192997 JG10_RS14385 WP_019726271.1 2997537..2998046(-) (radC) [Pseudomonas aeruginosa strain CCBH4851]
MSQLSFSSFDAALMVRDSQGHYLPATADQILEAARQAIEHKMQRGASFSSPSEVKEYLRAKLAGFEHEVFAVLFLDSQHR
LIEYAEMFHGTIDSASVYPREVVKEALRLNAAAVIVSHNHPSGNPEPSAADRALTLQLKSALALVDVRTLDHIIVAGSLT
TSFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=192997 JG10_RS14385 WP_019726271.1 2997537..2998046(-) (radC) [Pseudomonas aeruginosa strain CCBH4851]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGCCGCGCTGATGGTGCGCGACTCCCAAGGTCATTACCTGCCGGCGACGGC
CGACCAGATTCTGGAGGCCGCGCGCCAGGCCATCGAGCACAAGATGCAGCGCGGTGCCTCATTCAGTTCACCGTCGGAAG
TCAAGGAGTACCTGCGCGCCAAACTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCCTCGATTCGCAGCATCGC
CTTATCGAGTATGCCGAGATGTTCCACGGCACCATCGACAGCGCATCGGTGTATCCGCGCGAAGTGGTGAAGGAAGCGCT
GCGGCTCAACGCGGCAGCGGTCATCGTTTCGCACAACCACCCGAGCGGCAATCCAGAGCCAAGTGCGGCCGACAGGGCAT
TGACGTTGCAACTCAAGAGCGCGCTGGCGCTGGTGGACGTTCGCACGTTGGATCACATCATCGTGGCGGGCAGCCTCACT
ACGTCCTTCGCCGAACGTGGCTTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.429

82.84

0.385