Detailed information NTG0192974

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JG10_RS06805
• Genome accession: NZ_CP021380
• Coordinates: 1457817..1458821 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CCBH4851
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1452817..1463821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JG10_RS06775 (AL347_24635)	fghA	1452909..1453760 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
JG10_RS06780 (AL347_24640)	ispF	1453831..1454304 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JG10_RS06785 (AL347_24645)	truD	1454301..1455368 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
JG10_RS06790 (AL347_24650)	surE	1455356..1456105 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
JG10_RS06795 (AL347_24655)	-	1456138..1456773 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JG10_RS06800 (AL347_24660)	-	1456819..1457712 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
JG10_RS06805 (AL347_24665)	rpoS	1457817..1458821 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
JG10_RS06810 (AL347_24670)	fdxA	1459247..1459570 (-)	324	WP_003119354.1	ferredoxin FdxA	-
JG10_RS06815 (AL347_24675)	mutS	1459637..1462204 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
JG10_RS06820 (AL347_24685)	-	1462330..1463337 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=192974 JG10_RS06805 WP_003113871.1 1457817..1458821(+) (rpoS) [Pseudomonas aeruginosa strain CCBH4851]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=192974 JG10_RS06805 WP_003113871.1 1457817..1458821(+) (rpoS) [Pseudomonas aeruginosa strain CCBH4851]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653