Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB987_RS12940 Genome accession   NZ_CP021347
Coordinates   2671370..2672311 (+) Length   313 a.a.
NCBI ID   WP_001159456.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8300     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2666370..2677311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS12930 (AB987_2625) basA 2666793..2668640 (+) 1848 WP_000910264.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  AB987_RS12935 (AB987_2626) basB 2668711..2670738 (-) 2028 WP_002126571.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  AB987_RS19305 (AB987_2627) - 2671239..2671370 (+) 132 WP_001218004.1 hypothetical protein -
  AB987_RS12940 (AB987_2628) ceuB 2671370..2672311 (+) 942 WP_001159456.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  AB987_RS12945 (AB987_2629) bauC 2672311..2673258 (+) 948 WP_001223286.1 ferric acinetobactin ABC transporter permease subunit BauC -
  AB987_RS12950 (AB987_2630) bauE 2673255..2674025 (+) 771 WP_000582117.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  AB987_RS12955 (AB987_2631) bauB 2674032..2675000 (+) 969 WP_001104126.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33962.04 Da        Isoelectric Point: 8.4665

>NTDB_id=192937 AB987_RS12940 WP_001159456.1 2671370..2672311(+) (ceuB) [Acinetobacter baumannii strain B8300]
MQFGLFCIFIILCICSLLLGAEPIQWTTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=192937 AB987_RS12940 WP_001159456.1 2671370..2672311(+) (ceuB) [Acinetobacter baumannii strain B8300]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCATTATTGCTCGGGGCTGAGCCAATACAGTGGAC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATCCCTCGTTTAATCACTATTGTGCTCA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGCTTGATGTACGGCAGTGTACTGAGCGCTTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGGGATTTTTCAAAAATTGTCCAAGGTCATTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCCTAGGACTTA
GTTATGCAGCTATAGCCGCTATTGGTTTAATACTGGTTGCCATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTGCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTGGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCAATCATTTATCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419

Multiple sequence alignment