Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AB987_RS10580 Genome accession   NZ_CP021347
Coordinates   2163220..2163735 (-) Length   171 a.a.
NCBI ID   WP_000477150.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158220..2168735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS10555 (AB987_2145) - 2158767..2160410 (+) 1644 WP_000281768.1 nitrite/sulfite reductase -
  AB987_RS10560 (AB987_2146) - 2160403..2160888 (+) 486 WP_000935245.1 DUF934 domain-containing protein -
  AB987_RS10565 (AB987_2147) - 2160970..2161323 (+) 354 WP_000457784.1 multidrug efflux SMR transporter -
  AB987_RS10570 (AB987_2148) - 2161369..2161809 (-) 441 Protein_2031 VOC family protein -
  AB987_RS10575 (AB987_2149) - 2161936..2163111 (-) 1176 WP_000129973.1 thiolase family protein -
  AB987_RS10580 (AB987_2150) fimT 2163220..2163735 (-) 516 WP_000477150.1 GspH/FimT family pseudopilin Machinery gene
  AB987_RS10585 (AB987_2151) omp38 2164118..2165161 (+) 1044 WP_000777884.1 outer membrane protein Omp38 -
  AB987_RS19000 (AB987_2152) - 2165286..2165429 (-) 144 WP_162541494.1 hypothetical protein -
  AB987_RS10590 (AB987_2153) - 2165448..2166653 (-) 1206 WP_032067711.1 RtcB family protein -
  AB987_RS10595 (AB987_2154) - 2166930..2168390 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19640.87 Da        Isoelectric Point: 8.8196

>NTDB_id=192928 AB987_RS10580 WP_000477150.1 2163220..2163735(-) (fimT) [Acinetobacter baumannii strain B8300]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=192928 AB987_RS10580 WP_000477150.1 2163220..2163735(-) (fimT) [Acinetobacter baumannii strain B8300]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427