Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AB895_RS04170 Genome accession   NZ_CP021342
Coordinates   889466..889981 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 884466..894981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS04155 (AB895_0835) - 884812..886272 (+) 1461 WP_032059048.1 amino acid permease -
  AB895_RS04160 (AB895_0836) - 886548..887753 (+) 1206 WP_000512701.1 RtcB family protein -
  AB895_RS19340 (AB895_0837) - 887772..887915 (+) 144 WP_162541494.1 hypothetical protein -
  AB895_RS04165 (AB895_0838) omp38 888040..889083 (-) 1044 WP_000777884.1 outer membrane protein Omp38 -
  AB895_RS04170 (AB895_0839) fimT 889466..889981 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  AB895_RS04175 (AB895_0840) - 890090..891265 (+) 1176 WP_000129968.1 thiolase family protein -
  AB895_RS04180 (AB895_0841) - 891392..891835 (+) 444 WP_001176583.1 VOC family protein -
  AB895_RS04185 (AB895_0842) - 891878..892231 (-) 354 WP_000457783.1 multidrug efflux SMR transporter -
  AB895_RS04190 (AB895_0843) - 892314..892799 (-) 486 WP_000935246.1 DUF934 domain-containing protein -
  AB895_RS04195 (AB895_0844) - 892792..894435 (-) 1644 WP_000281767.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=192810 AB895_RS04170 WP_000477151.1 889466..889981(+) (fimT) [Acinetobacter baumannii strain B8342]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=192810 AB895_RS04170 WP_000477151.1 889466..889981(+) (fimT) [Acinetobacter baumannii strain B8342]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427