Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   BFI33_RS08050 Genome accession   NZ_CP016852
Coordinates   1517309..1517587 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain 168G     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1512309..1522587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFI33_RS08030 (BFI33_08030) panEB 1513496..1514407 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  BFI33_RS08035 (BFI33_08035) ampS 1514441..1515673 (-) 1233 WP_003232341.1 aminopeptidase -
  BFI33_RS08040 (BFI33_08040) ykpC 1515783..1515917 (-) 135 WP_003238865.1 protein YkpC -
  BFI33_RS08045 (BFI33_08045) mreBH 1516018..1517025 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  BFI33_RS08050 (BFI33_08050) abrB 1517309..1517587 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  BFI33_RS08055 (BFI33_08055) kinC 1517777..1519063 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  BFI33_RS08060 (BFI33_08060) ykqA 1519079..1519912 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  BFI33_RS08065 (BFI33_08065) ktrC 1519975..1520640 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BFI33_RS08070 (BFI33_08070) ade 1520795..1522528 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=192768 BFI33_RS08050 WP_003244728.1 1517309..1517587(+) (abrB) [Bacillus subtilis subsp. subtilis strain 168G]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=192768 BFI33_RS08050 WP_003244728.1 1517309..1517587(+) (abrB) [Bacillus subtilis subsp. subtilis strain 168G]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment