Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BFC21_RS25240 Genome accession   NZ_CP016849
Coordinates   5310333..5310968 (+) Length   211 a.a.
NCBI ID   WP_029611293.1    Uniprot ID   -
Organism   Pseudomonas sp. TMW 2.1634     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5305333..5315968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC21_RS25220 (BFC21_24310) - 5305665..5306597 (+) 933 WP_095005482.1 ABC transporter ATP-binding protein -
  BFC21_RS25225 (BFC21_24315) - 5306594..5307373 (+) 780 WP_016779932.1 ABC transporter permease -
  BFC21_RS25230 (BFC21_24320) - 5307419..5307934 (-) 516 WP_016779933.1 DUF2062 domain-containing protein -
  BFC21_RS25235 (BFC21_24325) - 5308069..5310284 (+) 2216 Protein_4827 DNA internalization-related competence protein ComEC/Rec2 -
  BFC21_RS25240 (BFC21_24330) exbB 5310333..5310968 (+) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BFC21_RS25245 (BFC21_24335) - 5310965..5311393 (+) 429 WP_088379256.1 biopolymer transporter ExbD -
  BFC21_RS25250 (BFC21_24340) lpxK 5311393..5312403 (+) 1011 WP_120266602.1 tetraacyldisaccharide 4'-kinase -
  BFC21_RS25255 (BFC21_24345) - 5312425..5312610 (+) 186 WP_086796064.1 Trm112 family protein -
  BFC21_RS25260 (BFC21_24350) kdsB 5312607..5313371 (+) 765 WP_016779940.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BFC21_RS25265 (BFC21_24355) murB 5313368..5314387 (+) 1020 WP_088379258.1 UDP-N-acetylmuramate dehydrogenase -
  BFC21_RS25270 (BFC21_24360) - 5314403..5315014 (+) 612 WP_016779942.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23020.24 Da        Isoelectric Point: 6.8765

>NTDB_id=192731 BFC21_RS25240 WP_029611293.1 5310333..5310968(+) (exbB) [Pseudomonas sp. TMW 2.1634]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=192731 BFC21_RS25240 WP_029611293.1 5310333..5310968(+) (exbB) [Pseudomonas sp. TMW 2.1634]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGTCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGACTCACCCCTGGGGGAGATTCTCGCTGCCGGCCTGGCCAAC
TCCCGTCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCGCGGGTCATTCACGAGCTGGAGCGTTATCT
CAATACCCTGGGCACCATCGCGGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCCATCCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACGGCT
GCAGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAGCGTCGCGTTGACGACCTGGTGGTCGGCAT
GGAACAGGAAGCAATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTTGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment