Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BFC23_RS08705 Genome accession   NZ_CP016844
Coordinates   1806028..1807845 (-) Length   605 a.a.
NCBI ID   WP_010050640.1    Uniprot ID   K8E5D8
Organism   Carnobacterium maltaromaticum strain TMW 2.1581     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801028..1812845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC23_RS08680 (BFC23_08565) - 1801893..1802795 (-) 903 WP_119906532.1 RluA family pseudouridine synthase -
  BFC23_RS08685 (BFC23_08570) - 1802785..1803597 (-) 813 WP_015076977.1 NAD kinase -
  BFC23_RS08690 (BFC23_08575) - 1803665..1804318 (-) 654 WP_010050647.1 GTP pyrophosphokinase family protein -
  BFC23_RS08695 (BFC23_08580) - 1804487..1805068 (+) 582 WP_119906533.1 CYTH domain-containing protein -
  BFC23_RS08700 (BFC23_08585) - 1805258..1805950 (+) 693 WP_010050643.1 DsbA family protein -
  BFC23_RS08705 (BFC23_08590) pepF 1806028..1807845 (-) 1818 WP_010050640.1 oligoendopeptidase F Regulator
  BFC23_RS08710 (BFC23_08595) - 1807987..1809153 (-) 1167 WP_010050639.1 competence protein CoiA family protein -
  BFC23_RS08715 (BFC23_08600) - 1809359..1810027 (-) 669 WP_010050637.1 adaptor protein MecA -
  BFC23_RS08720 (BFC23_08605) spxA 1810272..1810670 (-) 399 WP_010050634.1 transcriptional regulator SpxA -
  BFC23_RS08725 (BFC23_08610) - 1811139..1812494 (-) 1356 WP_010050631.1 PFL family protein -
  BFC23_RS08730 (BFC23_08615) - 1812519..1812788 (-) 270 WP_010050629.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69125.24 Da        Isoelectric Point: 4.5430

>NTDB_id=192696 BFC23_RS08705 WP_010050640.1 1806028..1807845(-) (pepF) [Carnobacterium maltaromaticum strain TMW 2.1581]
MAETKKLPTRAEVPEELTWDLEVIFKSDAEFNQSYQELEEKLTKVDSVKGKIGQSSEDLLKGIDYLLDISNQLETIYVYA
HLKNDQDTTNSEYQAMYDRANNLATKSSEAISWFEPEVLEIPEETLAKFFEENKKLDIYRHFIDQMTSSRAHILSANEEA
LLAGAGEIFGASSRTFSVLNNADIQFPVIKDEEGNDIQLTHGVYGQLMESTNREVREAAFKNLYKTYEGLKNTFASTLSA
HVKYHNYNADVHHYSSARAKALAANHIPEAVYDTLLEVVTENLPLLHRYVALRKELLDVEELHMYDLYTPITGEATVSYT
YEEAKAETLKALAPLGEEYLSIVEEAFENRWVDVVENSGKRSGAYSSGAYETNPYILMNWNDTLNQLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENLLTEYLLETQTDPKIRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHEKAAAGI
PLTTEFMSDYYGKLNARYYGPDVVEDPEIAIEWTRIPHFYYNYYVYQYATGFSAASALAAKILAGEEHALEHYLDYLKSG
SSNFPIEVMKKAGVDMTEKAYITDAMHVFEARLNEFEALIAELKA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=192696 BFC23_RS08705 WP_010050640.1 1806028..1807845(-) (pepF) [Carnobacterium maltaromaticum strain TMW 2.1581]
ATGGCAGAAACAAAAAAATTACCTACGAGAGCAGAAGTACCTGAAGAGCTAACTTGGGATTTAGAAGTTATTTTTAAATC
AGATGCTGAATTTAATCAAAGCTATCAAGAGTTGGAAGAAAAATTAACAAAAGTTGATTCGGTTAAAGGTAAAATCGGTC
AAAGTTCAGAAGATTTATTAAAAGGAATCGATTATTTGTTAGATATTTCCAATCAACTTGAAACCATTTATGTCTACGCG
CATTTAAAAAATGATCAAGATACGACAAATTCAGAGTATCAAGCAATGTATGATCGTGCGAATAATTTAGCAACAAAATC
TAGTGAGGCAATTTCTTGGTTTGAACCAGAAGTTCTAGAAATTCCAGAAGAAACGCTTGCTAAATTTTTCGAAGAAAATA
AAAAACTCGACATCTATCGTCACTTTATTGATCAAATGACAAGTTCAAGAGCTCATATTCTTTCAGCAAATGAAGAAGCA
CTCTTGGCTGGTGCAGGAGAAATTTTTGGAGCATCAAGTCGAACTTTTAGCGTCTTAAATAATGCAGATATTCAATTTCC
TGTTATTAAGGATGAAGAAGGAAATGATATTCAATTAACCCACGGTGTATATGGACAATTAATGGAAAGTACTAATCGTG
AAGTGCGTGAGGCTGCTTTTAAAAATTTGTATAAAACTTATGAGGGATTAAAAAATACGTTTGCAAGCACATTATCAGCT
CATGTAAAATATCATAACTATAACGCAGATGTACATCACTATTCATCAGCAAGAGCTAAAGCTCTAGCAGCAAACCATAT
CCCAGAAGCTGTTTATGATACATTATTAGAGGTAGTGACAGAAAACTTACCATTGTTACATCGTTATGTAGCATTACGGA
AAGAACTGCTAGATGTTGAAGAGTTGCACATGTATGATTTGTATACGCCTATAACTGGTGAAGCAACAGTTAGTTACACT
TATGAAGAAGCTAAAGCAGAAACATTAAAAGCCTTGGCACCTTTAGGCGAAGAATATTTAAGTATTGTTGAAGAGGCATT
TGAAAATCGCTGGGTCGATGTAGTTGAAAATAGCGGGAAGCGCAGTGGTGCATATTCATCAGGTGCTTATGAAACAAATC
CATATATTTTAATGAACTGGAATGATACGCTGAATCAATTGTTTACCCTAGTTCACGAGATGGGACATAGTGTTCATAGT
TATTATACACGGAAAAATCAACCGTACGTTTACGGAGATTATTCAATCTTCTTAGCTGAAATTGCATCAACGACGAATGA
AAACCTATTGACTGAATATTTACTTGAAACACAAACGGATCCTAAAATTAGAGCCTATGTATTAAATCATTATTTAGATG
GTTTTAAAGGAACCATTTTCCGTCAAACACAATTTGCCGAATTTGAACATTTTATTCATGAAAAAGCTGCAGCAGGAATT
CCTTTAACAACAGAATTTATGTCTGATTATTACGGGAAATTAAATGCTCGTTACTACGGACCTGACGTAGTTGAAGATCC
TGAAATCGCGATTGAATGGACTAGAATTCCGCATTTTTACTACAATTACTATGTTTATCAATATGCAACTGGATTTTCGG
CAGCATCAGCATTAGCGGCTAAAATTTTAGCTGGTGAAGAACATGCCTTAGAGCATTATTTAGACTATTTAAAATCAGGA
AGTAGTAATTTCCCAATTGAAGTCATGAAAAAAGCCGGTGTTGATATGACCGAAAAGGCTTATATTACCGATGCCATGCA
TGTTTTTGAGGCACGTTTAAATGAATTTGAAGCTTTGATTGCAGAGTTGAAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8E5D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.686

0.522

Multiple sequence alignment