Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC95JB1_RS23525 Genome accession   NZ_CP021335
Coordinates   4397862..4398530 (-) Length   222 a.a.
NCBI ID   WP_001369806.1    Uniprot ID   -
Organism   Escherichia coli strain 95JB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4392862..4403530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC95JB1_RS23495 (EC95JB1_03032) rfaQ 4393040..4394098 (-) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EC95JB1_RS23500 (EC95JB1_03034) waaA 4394511..4395788 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EC95JB1_RS23505 (EC95JB1_03035) coaD 4395796..4396275 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EC95JB1_RS23510 (EC95JB1_03036) mutM 4396314..4397123 (-) 810 WP_001114538.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EC95JB1_RS23515 (EC95JB1_03037) rpmG 4397221..4397388 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EC95JB1_RS23520 (EC95JB1_03038) rpmB 4397409..4397645 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EC95JB1_RS23525 (EC95JB1_03039) radC 4397862..4398530 (-) 669 WP_001369806.1 DNA repair protein RadC Machinery gene
  EC95JB1_RS23530 (EC95JB1_03040) coaBC 4398702..4399922 (+) 1221 WP_000050144.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EC95JB1_RS23535 (EC95JB1_03041) dut 4399900..4400358 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EC95JB1_RS23540 (EC95JB1_03042) slmA 4400465..4401061 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EC95JB1_RS23545 (EC95JB1_03043) pyrE 4401098..4401739 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EC95JB1_RS23550 (EC95JB1_03044) rph 4401805..4402521 (-) 717 WP_001247089.1 ribonuclease PH -
  EC95JB1_RS23560 (EC95JB1_03045) yicC 4402648..4403511 (+) 864 WP_000621337.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25157.28 Da        Isoelectric Point: 7.9747

>NTDB_id=192693 EC95JB1_RS23525 WP_001369806.1 4397862..4398530(-) (radC) [Escherichia coli strain 95JB1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPAMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAELGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=192693 EC95JB1_RS23525 WP_001369806.1 4397862..4398530(-) (radC) [Escherichia coli strain 95JB1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGCGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACTCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

98.198

0.491