Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BFC22_RS09535 Genome accession   NZ_CP016843
Coordinates   2038070..2039773 (-) Length   567 a.a.
NCBI ID   WP_119908265.1    Uniprot ID   -
Organism   Carnobacterium divergens strain TMW 2.1579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033070..2044773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC22_RS09510 (BFC22_09510) - 2033510..2034466 (+) 957 WP_034568881.1 magnesium transporter CorA family protein -
  BFC22_RS09515 - 2034542..2034691 (+) 150 WP_074403285.1 DUF4044 domain-containing protein -
  BFC22_RS09520 (BFC22_09515) - 2034732..2035970 (-) 1239 WP_034568879.1 FtsX-like permease family protein -
  BFC22_RS09525 (BFC22_09520) - 2035967..2036677 (-) 711 WP_034568877.1 ABC transporter ATP-binding protein -
  BFC22_RS09530 (BFC22_09525) - 2036692..2037861 (-) 1170 WP_034568874.1 hypothetical protein -
  BFC22_RS09535 (BFC22_09530) recN 2038070..2039773 (-) 1704 WP_119908265.1 DNA repair protein RecN Machinery gene
  BFC22_RS09540 (BFC22_09535) argR 2039810..2040259 (-) 450 WP_034568869.1 transcriptional regulator ArgR -
  BFC22_RS09545 (BFC22_09540) - 2040444..2041262 (-) 819 WP_034568867.1 TlyA family RNA methyltransferase -
  BFC22_RS09550 (BFC22_09545) - 2041271..2042161 (-) 891 WP_119908266.1 polyprenyl synthetase family protein -
  BFC22_RS09555 (BFC22_09550) - 2042174..2042404 (-) 231 WP_034568863.1 exodeoxyribonuclease VII small subunit -
  BFC22_RS09560 (BFC22_09555) xseA 2042404..2043741 (-) 1338 WP_119908267.1 exodeoxyribonuclease VII large subunit -
  BFC22_RS09565 (BFC22_09560) - 2043764..2044603 (-) 840 WP_034573423.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64067.13 Da        Isoelectric Point: 5.0206

>NTDB_id=192674 BFC22_RS09535 WP_119908265.1 2038070..2039773(-) (recN) [Carnobacterium divergens strain TMW 2.1579]
MLQELAIKNFAIIHDLSLSFENGMTVLTGETGAGKSIIIDAVGLLAGGRGSSEFIRHGESKCVLEGLFSLNKEATTFDLL
KEYDIDFEDHTVLIQRDIHRNGKNVCRVNGRLVNIATLRLIGETMIDIHGQNEHQELMNPERHLGMLDQFGNETLSRLKA
DYHQTYLAYQTAKTTYEKWQNSEQELAQRMDMLAYQTNDIELAELVVGEDDLLEEEKNLLVNYQRIVGALSVSYDALQGE
EGSGIDLIGTAMTEMSGIEEIDGKYKQISESISNSYFQLQEAASDILKEMDQLAYDENRLNEIEKRLELIHQMKRKYGDS
LAEIMNYYEKITIELSQIKNREDHIYTLTTELKELSEQLTKKGQVLSKKRQEVAKGLEISIHEQLKELYMEKVIFEVRFL
SKETNGKSFNENGIDQVEFYIATNPGEPLKPLAKVASGGELSRMMLAMKTIFSKNLGITSIIFDEVDTGVSGRVAQAIAN
KIYLVAVHSQVLCITHLPQVAAMADHHLFISKTVVGERTETHVDLLKKSAKVQEIARMLAGTEITKLTLEHAKELLELAK
TEKHKYI

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=192674 BFC22_RS09535 WP_119908265.1 2038070..2039773(-) (recN) [Carnobacterium divergens strain TMW 2.1579]
ATGTTACAAGAACTAGCCATTAAAAATTTCGCGATTATTCACGATTTGTCATTAAGTTTTGAAAATGGAATGACCGTTTT
AACGGGTGAGACGGGTGCAGGTAAATCAATTATCATTGATGCAGTAGGTTTATTAGCAGGCGGAAGAGGCTCAAGCGAGT
TTATCCGTCACGGTGAGTCCAAATGCGTCCTAGAAGGTTTATTCTCATTAAATAAAGAAGCCACTACTTTTGATTTATTA
AAAGAATATGATATTGATTTTGAAGATCATACCGTTTTGATTCAACGAGATATTCACCGAAATGGGAAAAATGTCTGTCG
AGTTAATGGACGCTTAGTCAATATTGCTACATTACGTTTGATTGGTGAAACGATGATTGACATTCATGGTCAAAATGAGC
ACCAAGAATTAATGAATCCAGAACGTCACTTAGGAATGCTAGATCAATTTGGTAATGAGACATTAAGTCGCTTAAAAGCA
GATTATCATCAAACTTATCTAGCCTACCAAACCGCTAAAACAACTTATGAGAAGTGGCAAAATAGCGAACAAGAATTAGC
TCAACGAATGGATATGCTAGCCTATCAAACCAACGACATTGAATTAGCTGAACTAGTTGTTGGAGAAGATGATTTACTAG
AAGAAGAAAAAAACTTATTAGTTAATTATCAACGAATTGTTGGTGCCCTTTCAGTTAGCTATGATGCTCTGCAAGGAGAG
GAAGGTAGTGGCATCGATTTAATTGGCACTGCGATGACTGAAATGAGTGGAATTGAAGAAATCGATGGCAAGTACAAACA
AATTTCTGAAAGTATTTCCAATAGTTATTTTCAACTACAAGAAGCAGCTAGTGATATTTTAAAAGAAATGGATCAGCTAG
CCTATGATGAAAATCGTTTAAATGAAATCGAGAAGAGACTTGAACTGATTCATCAGATGAAACGAAAATATGGCGATTCT
TTAGCTGAAATCATGAATTATTATGAAAAAATAACCATTGAATTAAGCCAAATTAAAAATCGAGAAGATCATATTTATAC
GTTAACAACTGAACTCAAAGAATTATCAGAACAATTGACCAAAAAAGGGCAAGTATTGTCCAAAAAACGACAAGAAGTTG
CTAAAGGTCTAGAAATCAGTATTCATGAGCAATTAAAAGAGCTTTATATGGAAAAAGTTATTTTTGAAGTTCGCTTCCTT
TCAAAAGAAACAAATGGAAAAAGCTTCAATGAAAACGGAATTGATCAGGTTGAGTTTTATATTGCAACCAATCCGGGAGA
ACCTTTAAAACCATTAGCAAAAGTAGCTTCAGGTGGAGAGCTTTCTCGAATGATGTTAGCAATGAAGACGATTTTCTCAA
AAAACTTAGGGATTACTAGTATCATCTTTGATGAAGTTGATACTGGAGTAAGTGGTCGAGTAGCACAAGCAATTGCGAAT
AAAATTTATTTAGTAGCTGTTCATTCACAAGTTTTATGTATTACTCATTTGCCACAAGTTGCAGCAATGGCGGATCATCA
TCTTTTTATTTCCAAAACTGTTGTAGGAGAACGAACAGAGACCCATGTTGACTTGCTAAAAAAATCAGCTAAAGTACAAG
AAATCGCTCGAATGCTAGCAGGAACTGAGATAACTAAATTGACTTTGGAGCATGCAAAAGAATTACTAGAACTAGCCAAA
ACTGAAAAACACAAATACATTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.613

100

0.51

Multiple sequence alignment