Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC95JB1_RS13560 Genome accession   NZ_CP021335
Coordinates   2479737..2480213 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 95JB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2474737..2485213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC95JB1_RS13525 (EC95JB1_01077) - 2474898..2476110 (-) 1213 Protein_2496 IS3 family transposase -
  EC95JB1_RS13530 (EC95JB1_01080) - 2476145..2476873 (+) 729 Protein_2497 patatin-like phospholipase family protein -
  EC95JB1_RS13535 (EC95JB1_01081) - 2477009..2477692 (+) 684 WP_000775497.1 hypothetical protein -
  EC95JB1_RS13540 (EC95JB1_01082) - 2477708..2478118 (+) 411 WP_000846711.1 hypothetical protein -
  EC95JB1_RS13550 (EC95JB1_01083) - 2478339..2479160 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  EC95JB1_RS13555 (EC95JB1_01084) - 2479242..2479721 (+) 480 WP_000860076.1 antirestriction protein -
  EC95JB1_RS13560 (EC95JB1_01085) radC 2479737..2480213 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EC95JB1_RS13565 (EC95JB1_01086) yeeT 2480282..2480503 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  EC95JB1_RS13570 (EC95JB1_01087) cbeA 2480577..2480945 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EC95JB1_RS13575 (EC95JB1_01088) cbtA 2481034..2481407 (+) 374 Protein_2505 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EC95JB1_RS13585 (EC95JB1_01089) yeeW 2481404..2481598 (+) 195 WP_000988599.1 DUF5983 family protein -
  EC95JB1_RS29860 - 2481644..2481724 (+) 81 Protein_2507 hypothetical protein -
  EC95JB1_RS31130 - 2482213..2482395 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EC95JB1_RS13595 (EC95JB1_01090) tmaR 2482496..2482825 (-) 330 WP_000450409.1 DUF496 family protein -
  EC95JB1_RS13600 (EC95JB1_01092) yeeA 2482997..2484056 (-) 1060 Protein_2510 FUSC family protein -
  EC95JB1_RS13605 (EC95JB1_01093) sbmC 2484254..2484727 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=192663 EC95JB1_RS13560 WP_001186773.1 2479737..2480213(+) (radC) [Escherichia coli strain 95JB1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=192663 EC95JB1_RS13560 WP_001186773.1 2479737..2480213(+) (radC) [Escherichia coli strain 95JB1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392