Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BFC22_RS05915 Genome accession   NZ_CP016843
Coordinates   1282428..1284242 (+) Length   604 a.a.
NCBI ID   WP_034570388.1    Uniprot ID   A0A0R2HY70
Organism   Carnobacterium divergens strain TMW 2.1579     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277428..1289242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC22_RS05890 (BFC22_05890) - 1277447..1278574 (+) 1128 WP_119907875.1 ABC transporter ATP-binding protein -
  BFC22_RS05895 (BFC22_05895) - 1278567..1279508 (+) 942 WP_034570396.1 ATP-binding cassette domain-containing protein -
  BFC22_RS05900 (BFC22_05900) spxA 1279834..1280232 (+) 399 WP_034570394.1 transcriptional regulator SpxA -
  BFC22_RS05905 (BFC22_05905) - 1280421..1281089 (+) 669 WP_034570390.1 adaptor protein MecA -
  BFC22_RS05910 (BFC22_05910) - 1281188..1282342 (+) 1155 WP_119907876.1 competence protein CoiA family protein -
  BFC22_RS05915 (BFC22_05915) pepF 1282428..1284242 (+) 1815 WP_034570388.1 oligoendopeptidase F Regulator
  BFC22_RS05920 (BFC22_05920) - 1284281..1284988 (-) 708 WP_034570385.1 DsbA family protein -
  BFC22_RS05925 (BFC22_05925) - 1285172..1285753 (-) 582 WP_034570383.1 CYTH domain-containing protein -
  BFC22_RS05930 (BFC22_05930) - 1285921..1286565 (+) 645 WP_119907877.1 GTP pyrophosphokinase family protein -
  BFC22_RS05935 (BFC22_05935) - 1286584..1287396 (+) 813 WP_034570378.1 NAD kinase -
  BFC22_RS05940 (BFC22_05940) - 1287386..1288294 (+) 909 WP_034570376.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69401.93 Da        Isoelectric Point: 4.8693

>NTDB_id=192659 BFC22_RS05915 WP_034570388.1 1282428..1284242(+) (pepF) [Carnobacterium divergens strain TMW 2.1579]
MTETKKLPLRNEVPENLTWDLDVIFKSDEEFNQNYLLLEEKLKKVDQVKGKIGMNSDLFLQGINFLLDVSNDLETLYVYA
HLKNDQDTNNDTYQGIYERASALATKVSESLSWFEPEVLEIPPEKLESFFKENTELKPYQHFINQMTSARSHVLSSNEEA
LLAGAGEIFTASSRTFNVLNNADIKFPIIKDENGENVQLSHGVYGQLMESTNREVRQSAFQNLSKTYAGLKNTFASTLSS
HVKYHNYNAKVHHYDSARAKALAANDIPEAVYDTLLAVVDENLPLLHRYVALRKDVLDVDTLHMYDMYTPITGEATIKFS
YDEAKKMTLEALAPLGEDYLKIVEEAFTNRWIDVVENEGKRSGAYSSGAYETNPYILMNWHDTLDQLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLETQTDPKIRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHEQAAKGI
PLTSEFMSDYYAKLNARYYGEAVEKDPEIAVEWARIPHFYYNYYVYQYATGFSAASALSAKILNKEEHALEKYLNYLKSG
SSDFPIEVMKKAGVDMTNKTYIEEAMAVFESRLNEFESLIKNKK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=192659 BFC22_RS05915 WP_034570388.1 1282428..1284242(+) (pepF) [Carnobacterium divergens strain TMW 2.1579]
ATGACAGAGACAAAAAAACTACCACTTCGCAATGAAGTTCCTGAAAATTTAACGTGGGATTTAGACGTTATCTTTAAATC
AGATGAAGAGTTCAATCAAAATTATTTACTTTTGGAAGAAAAGTTAAAAAAAGTTGATCAAGTAAAAGGTAAAATTGGAA
TGAATTCTGATTTGTTTTTACAAGGAATTAACTTTTTGCTAGATGTATCCAATGATTTAGAGACGTTATATGTTTATGCG
CATTTAAAAAATGATCAAGATACAAATAATGATACGTATCAAGGGATTTATGAACGTGCATCAGCACTTGCAACGAAAGT
TAGCGAAAGTTTATCTTGGTTTGAGCCTGAAGTATTGGAAATTCCTCCTGAAAAATTAGAAAGCTTTTTTAAAGAAAATA
CAGAATTAAAACCGTACCAACATTTTATCAATCAGATGACTAGCGCTAGATCCCATGTCTTATCTTCAAATGAAGAGGCT
TTACTGGCAGGAGCAGGGGAAATTTTTACGGCTTCCAGTCGGACGTTTAATGTATTGAATAATGCAGATATCAAGTTTCC
AATTATAAAAGATGAGAACGGAGAAAATGTCCAACTATCTCATGGCGTTTATGGTCAATTAATGGAAAGTACAAATCGTG
AAGTTCGTCAGTCTGCTTTTCAAAATTTGTCTAAAACCTATGCAGGCTTGAAAAATACATTTGCAAGTACGTTATCTTCT
CATGTGAAATACCACAATTACAATGCTAAGGTGCATCATTATGATTCAGCAAGAGCTAAAGCATTAGCTGCAAACGACAT
CCCAGAAGCTGTTTACGATACTTTATTAGCAGTGGTTGATGAAAATTTACCTTTGCTGCACCGTTATGTAGCATTGCGTA
AAGATGTATTAGATGTTGATACTCTGCATATGTATGATATGTACACACCTATCACAGGTGAAGCAACAATTAAATTTTCA
TATGATGAAGCTAAAAAGATGACCTTGGAAGCTTTAGCTCCTTTAGGAGAGGACTATTTGAAAATTGTCGAAGAAGCCTT
TACTAACCGCTGGATTGATGTTGTTGAGAATGAAGGGAAACGTAGTGGTGCCTATTCATCAGGAGCCTATGAAACAAACC
CTTATATTTTAATGAATTGGCACGACACATTAGATCAATTATTTACATTAGTTCATGAAATGGGGCATAGTGTTCATAGC
TATTATACAAGGAAGAATCAGCCTTATGTTTATGGAGATTATTCTATTTTCTTAGCGGAAATTGCGTCCACAACAAACGA
AAATATTTTAACTGAGTATTTATTGGAAACTCAGACTGATCCCAAAATTCGTGCTTATGTATTAAATCATTATCTAGATG
GATTCAAAGGAACTATTTTCCGTCAGACACAATTTGCTGAATTTGAACATTTTATTCACGAACAAGCAGCTAAGGGGATT
CCATTGACAAGTGAATTTATGTCAGATTATTATGCCAAATTAAATGCACGTTATTACGGAGAAGCAGTTGAAAAAGATCC
AGAGATTGCAGTAGAATGGGCGAGAATTCCACATTTTTATTACAATTATTATGTCTATCAATATGCAACCGGATTTTCAG
CAGCCTCTGCTTTATCAGCGAAAATTTTAAATAAAGAAGAGCATGCTCTTGAAAAATATCTTAATTATTTAAAATCAGGA
AGTAGTGATTTCCCAATCGAAGTGATGAAAAAAGCGGGTGTGGACATGACGAATAAAACATATATTGAAGAAGCAATGGC
TGTGTTTGAAAGTCGATTGAATGAATTTGAATCTTTAATAAAAAATAAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2HY70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

98.013

0.523

Multiple sequence alignment