Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BFC20_RS11555 Genome accession   NZ_CP016841
Coordinates   2381540..2383348 (-) Length   602 a.a.
NCBI ID   WP_069129145.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1572     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376540..2388348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC20_RS11545 (BFC20_11440) - 2378415..2379143 (-) 729 WP_119905230.1 amino acid ABC transporter ATP-binding protein -
  BFC20_RS13165 (BFC20_11445) - 2379124..2381286 (-) 2163 WP_069125705.1 amino acid ABC transporter substrate-binding protein/permease -
  BFC20_RS11555 (BFC20_11450) pepF 2381540..2383348 (-) 1809 WP_069129145.1 oligoendopeptidase F Regulator
  BFC20_RS11560 (BFC20_11455) - 2383425..2384537 (-) 1113 WP_029091613.1 competence protein CoiA -
  BFC20_RS11565 (BFC20_11460) mecA 2384658..2385338 (-) 681 WP_069119615.1 adaptor protein MecA -
  BFC20_RS11570 (BFC20_11465) spxA 2385597..2386004 (-) 408 WP_029091611.1 transcriptional regulator SpxA -
  BFC20_RS11575 (BFC20_11470) trpS 2386504..2387493 (+) 990 WP_232011805.1 tryptophan--tRNA ligase -
  BFC20_RS11580 (BFC20_11475) - 2387556..2388023 (-) 468 WP_029091609.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67852.88 Da        Isoelectric Point: 4.5985

>NTDB_id=192642 BFC20_RS11555 WP_069129145.1 2381540..2383348(-) (pepF) [Brochothrix thermosphacta strain TMW 2.1572]
MAGKAITRSEVPVKDTWDLTSIFETDDAWETEFKAVQVLAEEATKFQKTLGDSADQLLAALKYSDELVVRLSQVYVYASM
KHDQDTSNTEYQALNSRAESLAAKASAALSFFEPELLDIDEAVLAAFISESDELGVYAHELEQINKKRPHTLSAPEEALL
AKASEVLGSSQNTFGILNNADLRFPTIKDENGEDVEITHGLYGPLLENSDRRVRRDAFQNVYKTYKSLLNTFASTLTGQI
KQDNFNASVRKFSTARESAVFSNNIPESVHKTLLETVGNNVDLLHRYVSLRKQVLGLDELHVYDLYTPLVADVDELSFTY
EEAKQVTINALAPLGEEYVSILKEGFDKRWVDVVENKGKRSGAYSGGSYGTNPFILLNWHDTLDNLYTLVHEFGHSVHSY
LTRKNQPAVYGDYTIFLAEIASTTNENLLTDYLLKKYDDKKIQAYIINHFLDGFKGTVFRQTQFAEFEHLIHVADQEGNA
LTAEYLTDLYYGINKKYYGDALVHDEEIGNEWARIPHFYYNYYVYQYATGFSAASALAQHILDEGAPAVERYMTFLKAGN
SDYPIDVLKAAGVDMTTAKPIEDALKVFEARLTEFEAIIIEK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=192642 BFC20_RS11555 WP_069129145.1 2381540..2383348(-) (pepF) [Brochothrix thermosphacta strain TMW 2.1572]
ATGGCTGGAAAAGCAATTACACGCTCTGAAGTGCCTGTAAAAGACACTTGGGACTTAACAAGTATTTTTGAAACAGATGA
CGCATGGGAAACAGAATTTAAAGCTGTCCAAGTATTAGCAGAAGAAGCAACTAAATTCCAAAAAACATTAGGTGATAGTG
CAGACCAGCTTCTTGCAGCTTTAAAATATAGTGATGAGCTTGTTGTTCGTTTATCACAAGTTTATGTTTATGCAAGTATG
AAACATGATCAAGATACTAGCAATACAGAGTATCAAGCGTTAAATAGTCGTGCAGAATCATTGGCTGCCAAAGCCTCAGC
TGCACTATCTTTCTTTGAACCGGAATTATTAGATATTGATGAAGCGGTACTTGCCGCCTTTATTTCTGAATCTGACGAAT
TAGGTGTATACGCGCATGAGTTAGAACAAATCAATAAGAAACGTCCTCATACATTGTCTGCTCCTGAGGAAGCGTTATTA
GCTAAAGCAAGCGAAGTATTAGGCTCATCACAAAATACTTTTGGTATTCTAAATAATGCAGATTTACGTTTTCCAACAAT
CAAAGATGAAAATGGTGAAGATGTAGAGATTACACACGGTCTATACGGTCCATTATTGGAAAATAGCGATCGTCGTGTGC
GTCGTGACGCTTTCCAAAATGTGTATAAAACGTATAAGTCATTGCTTAATACATTTGCCTCAACGTTGACTGGTCAAATT
AAGCAAGATAACTTCAATGCATCTGTTCGTAAGTTTAGTACTGCCAGAGAGTCGGCTGTTTTCAGCAATAATATTCCTGA
GTCAGTTCATAAAACATTGCTTGAAACGGTAGGGAATAATGTTGATTTATTACATCGTTATGTGAGTTTACGCAAGCAGG
TATTAGGTCTTGACGAATTGCATGTTTACGATCTTTACACACCGCTTGTAGCGGATGTAGATGAGCTTTCATTTACGTAT
GAAGAAGCTAAACAAGTAACAATTAATGCCTTAGCACCTTTGGGTGAAGAATATGTTTCTATCCTTAAAGAAGGTTTTGA
TAAGCGTTGGGTAGATGTGGTTGAAAATAAAGGGAAACGTAGTGGCGCATACTCTGGCGGTTCATACGGTACAAATCCAT
TTATTCTATTAAACTGGCATGATACATTAGATAATTTGTATACATTAGTTCATGAGTTTGGGCACAGTGTGCATAGTTAT
CTTACTCGAAAAAATCAACCGGCAGTTTATGGCGATTATACAATCTTTTTAGCAGAGATTGCTTCAACTACCAATGAAAA
TTTATTGACAGATTATCTTCTGAAAAAATATGATGATAAAAAAATCCAAGCCTATATTATTAACCATTTCCTTGATGGTT
TTAAAGGTACTGTTTTCCGTCAAACACAATTTGCAGAATTTGAGCACCTTATTCATGTTGCTGATCAAGAAGGTAACGCT
TTAACAGCTGAATATCTAACTGATCTCTACTATGGTATTAATAAGAAATATTATGGTGATGCACTGGTACACGATGAAGA
AATTGGTAACGAATGGGCGCGTATTCCTCATTTCTACTACAATTATTACGTGTATCAATATGCAACTGGTTTTTCTGCAG
CTTCAGCTTTGGCACAACATATTTTGGACGAAGGAGCTCCAGCAGTAGAACGTTACATGACGTTCTTAAAAGCGGGTAAC
TCGGATTATCCAATCGATGTGTTGAAAGCTGCTGGCGTTGACATGACTACTGCAAAACCAATTGAGGATGCTTTGAAAGT
TTTCGAAGCACGTCTAACTGAATTCGAAGCAATTATTATAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-586)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507

Multiple sequence alignment