Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BFC20_RS05340 Genome accession   NZ_CP016841
Coordinates   1125498..1127180 (+) Length   560 a.a.
NCBI ID   WP_119904772.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1572     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120498..1132180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC20_RS05315 (BFC20_05275) xseB 1121004..1121240 (+) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -
  BFC20_RS05320 (BFC20_05280) - 1121237..1122118 (+) 882 WP_029091146.1 polyprenyl synthetase family protein -
  BFC20_RS05325 (BFC20_05285) dxs 1122144..1123931 (+) 1788 WP_069129465.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BFC20_RS05330 (BFC20_05290) - 1123945..1124769 (+) 825 WP_069118891.1 TlyA family RNA methyltransferase -
  BFC20_RS05335 (BFC20_05295) ahrC 1125018..1125467 (+) 450 WP_029091149.1 transcriptional regulator AhrC/ArgR -
  BFC20_RS05340 (BFC20_05300) recN 1125498..1127180 (+) 1683 WP_119904772.1 DNA repair protein RecN Machinery gene
  BFC20_RS05345 (BFC20_05305) buk 1127325..1128425 (+) 1101 WP_029091151.1 butyrate kinase -
  BFC20_RS13120 - 1128500..1128580 (-) 81 WP_227002028.1 hypothetical protein -
  BFC20_RS05350 (BFC20_05310) gndA 1128854..1130269 (+) 1416 WP_069118888.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63344.89 Da        Isoelectric Point: 5.1180

>NTDB_id=192631 BFC20_RS05340 WP_119904772.1 1125498..1127180(+) (recN) [Brochothrix thermosphacta strain TMW 2.1572]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAKPLK
AYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
AEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=192631 BFC20_RS05340 WP_119904772.1 1125498..1127180(+) (recN) [Brochothrix thermosphacta strain TMW 2.1572]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAGGGTCTTACAGTTTT
AACTGGTGAAACAGGTGCCGGAAAGTCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAAGCCGATTTAGAAGCATTGTTTACTATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATTTAATGAATGATGCTCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTAAACCTTTAAAA
GCATACCAATTACTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTGGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTCGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTGGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GCTGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATTGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCCTAGCGAATGATTTAACCGTTATACGCCAGCAGGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGCGGTAATAATCGTATTCAATTCTATACATCTACTAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTGTCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCATCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGTGTTAGCGGTCGAGTGGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTGGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTAATCCAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489

Multiple sequence alignment