Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BFC19_RS03475 Genome accession   NZ_CP016839
Coordinates   701256..702938 (-) Length   560 a.a.
NCBI ID   WP_069118890.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1564     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696256..707938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC19_RS03465 (BFC19_03425) gndA 698167..699582 (-) 1416 WP_069118888.1 NADP-dependent phosphogluconate dehydrogenase -
  BFC19_RS12480 prli42 699841..699936 (+) 96 WP_152792314.1 stressosome-associated protein Prli42 -
  BFC19_RS03470 (BFC19_03430) buk 700011..701111 (-) 1101 WP_029091151.1 butyrate kinase -
  BFC19_RS03475 (BFC19_03435) recN 701256..702938 (-) 1683 WP_069118890.1 DNA repair protein RecN Machinery gene
  BFC19_RS03480 (BFC19_03440) ahrC 702969..703418 (-) 450 WP_029091149.1 transcriptional regulator AhrC/ArgR -
  BFC19_RS03485 (BFC19_03445) - 703668..704492 (-) 825 WP_119945572.1 TlyA family RNA methyltransferase -
  BFC19_RS03490 (BFC19_03450) dxs 704506..706293 (-) 1788 WP_069129465.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BFC19_RS03495 (BFC19_03455) - 706319..707200 (-) 882 WP_029091146.1 polyprenyl synthetase family protein -
  BFC19_RS03500 (BFC19_03460) xseB 707197..707433 (-) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63345.83 Da        Isoelectric Point: 5.0123

>NTDB_id=192590 BFC19_RS03475 WP_069118890.1 701256..702938(-) (recN) [Brochothrix thermosphacta strain TMW 2.1564]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLK
AYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
AEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=192590 BFC19_RS03475 WP_069118890.1 701256..702938(-) (recN) [Brochothrix thermosphacta strain TMW 2.1564]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAGGGTCTTACAGTTTT
GACTGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAAGCCGATTTAGAAGCATTGTTTACTATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATTTAATGAATGATGCTCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTGAACCTTTAAAA
GCATACCAATTACTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTGGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTTGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTAGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GCTGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATCGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCTTAGCGAATGATTTAACCGTTATACGCCAGCAAGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGTGGTAATAATCGTATTCAATTCTATACATCTACAAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTATCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCACCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGCGTTAGCGGTCGAGTAGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTGGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTGATACAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489

Multiple sequence alignment