Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BER93_RS04165 Genome accession   NZ_CP016833
Coordinates   936337..936738 (+) Length   133 a.a.
NCBI ID   WP_002812043.1    Uniprot ID   -
Organism   Xanthomonas fragariae isolate Fap29     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 931337..941738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BER93_RS04150 (BER93_04150) tsaB 933456..934175 (+) 720 WP_002812046.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  BER93_RS04155 (BER93_04155) - 934287..935153 (-) 867 WP_002812045.1 energy transducer TonB -
  BER93_RS04160 (BER93_04160) gshB 935150..936100 (-) 951 WP_002812044.1 glutathione synthase -
  BER93_RS04165 (BER93_04165) pilG 936337..936738 (+) 402 WP_002812043.1 twitching motility response regulator PilG Regulator
  BER93_RS04170 (BER93_04170) - 936756..937118 (+) 363 WP_002812042.1 response regulator -
  BER93_RS04175 (BER93_04175) - 937118..937648 (+) 531 WP_002812041.1 chemotaxis protein CheW -
  BER93_RS04180 (BER93_04180) - 937688..939724 (+) 2037 WP_002812040.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14816.27 Da        Isoelectric Point: 8.4921

>NTDB_id=192548 BER93_RS04165 WP_002812043.1 936337..936738(+) (pilG) [Xanthomonas fragariae isolate Fap29]
MNENIAAGKELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADRHPQIIFVDIMMPRLDGYQTCALIK
GNQVFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSVIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=192548 BER93_RS04165 WP_002812043.1 936337..936738(+) (pilG) [Xanthomonas fragariae isolate Fap29]
ATGAATGAAAACATTGCTGCGGGTAAGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGATGTGAAGTAGTGACAGCGACCGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCGACACCCTCAGATCATTTTTGTCGACATTATGATGCCGCGCTTGGATGGGTACCAGACCTGCGCGTTGATCAAG
GGCAATCAGGTCTTTAAGTCGACGCCGGTGATCATGTTGTCTTCAAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGTGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677

Multiple sequence alignment