Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA45B_RS25585 Genome accession   NZ_CP021288
Coordinates   4950373..4950849 (+) Length   158 a.a.
NCBI ID   WP_001557203.1    Uniprot ID   -
Organism   Escherichia coli strain PA45B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4945373..4955849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA45B_RS25555 (PA45B_1703) - 4945503..4948349 (+) 2847 WP_085447589.1 Ag43/Cah family autotransporter adhesin -
  PA45B_RS25560 (PA45B_1702) - 4948420..4948615 (+) 196 Protein_4716 DUF905 family protein -
  PA45B_RS25570 (PA45B_1701) - 4948733..4949551 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  PA45B_RS25580 (PA45B_1700) - 4949893..4950357 (+) 465 WP_000855061.1 antirestriction protein -
  PA45B_RS25585 (PA45B_1699) radC 4950373..4950849 (+) 477 WP_001557203.1 RadC family protein Machinery gene
  PA45B_RS25590 (PA45B_1698) - 4950912..4951133 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  PA45B_RS25595 (PA45B_1696) - 4951296..4951664 (+) 369 WP_001332042.1 type IV toxin-antitoxin system YeeU family antitoxin -
  PA45B_RS25600 (PA45B_1695) - 4951753..4952130 (+) 378 WP_000854770.1 TA system toxin CbtA family protein -
  PA45B_RS25605 (PA45B_1694) - 4952127..4952615 (+) 489 WP_000761690.1 DUF5983 family protein -
  PA45B_RS25610 (PA45B_1693) - 4952632..4952808 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  PA45B_RS27630 (PA45B_1692) - 4952914..4953063 (+) 150 Protein_4725 hypothetical protein -
  PA45B_RS28530 - 4953033..4953167 (+) 135 Protein_4726 transcriptional regulator -
  PA45B_RS27635 - 4953430..4953606 (+) 177 Protein_4727 helix-turn-helix domain-containing protein -
  PA45B_RS25625 - 4954088..4955625 (+) 1538 WP_085953974.1 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17617.20 Da        Isoelectric Point: 7.2523

>NTDB_id=192483 PA45B_RS25585 WP_001557203.1 4950373..4950849(+) (radC) [Escherichia coli strain PA45B]
MQQLSFLPGEITPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=192483 PA45B_RS25585 WP_001557203.1 4950373..4950849(+) (radC) [Escherichia coli strain PA45B]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATAACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGCTTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399