Detailed information NTG0192436

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA45B_RS15695
• Genome accession: NZ_CP021288
• Coordinates: 3014320..3015312 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PA45B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3009320..3020312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA45B_RS15675 (PA45B_3540)	ygbM	3009951..3010727 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
PA45B_RS15680 (PA45B_3539)	ygbN	3010816..3012180 (+)	1365	WP_000104443.1	GntP family transporter	-
PA45B_RS15685 (PA45B_3538)	-	3012323..3013366 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PA45B_RS15690 (PA45B_3537)	-	3013591..3014142 (+)	552	WP_001179442.1	flavodoxin family protein	-
PA45B_RS15695 (PA45B_3536)	rpoS	3014320..3015312 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PA45B_RS15700 (PA45B_3535)	nlpD	3015375..3016469 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PA45B_RS15705 (PA45B_3534)	pcm	3016654..3017280 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PA45B_RS15710 (PA45B_3533)	surE	3017274..3018035 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PA45B_RS15715 (PA45B_3532)	truD	3018016..3019065 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
PA45B_RS15720 (PA45B_3531)	ispF	3019062..3019541 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA45B_RS15725 (PA45B_3530)	ispD	3019541..3020251 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=192436 PA45B_RS15695 WP_000081550.1 3014320..3015312(-) (rpoS) [Escherichia coli strain PA45B]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=192436 PA45B_RS15695 WP_000081550.1 3014320..3015312(-) (rpoS) [Escherichia coli strain PA45B]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715