Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BBD41_RS24265 Genome accession   NZ_CP016809
Coordinates   5392808..5393761 (+) Length   317 a.a.
NCBI ID   WP_007132170.1    Uniprot ID   -
Organism   Paenibacillus ihbetae strain IHBB 9852     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5387808..5398761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD41_RS24240 (BBD41_23980) - 5388844..5389566 (-) 723 WP_077567223.1 class I SAM-dependent methyltransferase -
  BBD41_RS24245 (BBD41_23985) - 5389706..5390404 (+) 699 WP_099479109.1 nucleotidyltransferase domain-containing protein -
  BBD41_RS24250 - 5390520..5390618 (+) 99 WP_077567221.1 sporulation protein YjcZ -
  BBD41_RS24255 (BBD41_23990) - 5390692..5391297 (-) 606 WP_077567220.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  BBD41_RS24260 (BBD41_23995) - 5391676..5392278 (-) 603 WP_099479111.1 nitroreductase family protein -
  BBD41_RS24265 (BBD41_24000) ceuB 5392808..5393761 (+) 954 WP_007132170.1 ABC transporter permease Machinery gene
  BBD41_RS24270 (BBD41_24005) - 5393751..5394698 (+) 948 WP_077567218.1 iron chelate uptake ABC transporter family permease subunit -
  BBD41_RS24275 (BBD41_24010) - 5394695..5395453 (+) 759 WP_099479113.1 ABC transporter ATP-binding protein -
  BBD41_RS24280 (BBD41_24015) - 5395816..5396778 (+) 963 WP_099480772.1 siderophore ABC transporter substrate-binding protein -
  BBD41_RS24285 (BBD41_24020) - 5397085..5398509 (+) 1425 WP_077569040.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34736.04 Da        Isoelectric Point: 9.7880

>NTDB_id=192386 BBD41_RS24265 WP_007132170.1 5392808..5393761(+) (ceuB) [Paenibacillus ihbetae strain IHBB 9852]
MKIIYLAAAVVALSIVSLFIGVKDISPLDLFSMTEQQQHIMLVSRLPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLVKMLVAFVFALAGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIIKGQYELLYISVPLVILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIYLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=192386 BBD41_RS24265 WP_007132170.1 5392808..5393761(+) (ceuB) [Paenibacillus ihbetae strain IHBB 9852]
ATGAAGATCATTTACTTAGCCGCAGCCGTTGTGGCGCTTTCCATCGTCTCCTTATTTATCGGAGTCAAAGATATTTCGCC
GCTGGACTTATTCTCCATGACGGAACAACAACAGCATATTATGCTCGTCAGCCGCTTGCCGCGTCTGGTCAGTTTAATTC
TGGCTGGAGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTTAGCCGCAACAAGTTCGTATCGCCGACAACGGCG
GGAACGATGGATTCCGCAAGACTGGGGATTCTCGTAGCGATGCTCGTATTCACGACAAGCGGACCGCTTGTGAAAATGCT
GGTAGCTTTTGTATTCGCTCTTGCCGGCACGTTTATCTTCATGAAGATCCTGGACCGGATCAAGTTCAAGGATGCGATCT
TTATTCCGCTCGTCGGACTCATGTTCGGGAACATTGTAAGCTCGATCGCTACGTTCTTCGCTTATAAATATGATCTCATT
CAGAACATGTCCGCATGGCTTCAAGGCGATTTTTCCATGATCATCAAGGGACAATACGAACTTCTGTATATCAGTGTTCC
GCTGGTCATCCTGGCCTACCTGTTCGCCAACAAATTCACGGTTGCCGGCATGGGTGAGGAATTCGCCACGAACCTAGGAC
TTCATTACCGGCGCGTCGTTAATTTGGGCTTGGTCATTGTAGCGCTGGTAACCGCATCCGTCGTATTGACGGTCGGCGTG
ATTCCTTTTCTCGGTTTGATCATACCGAATATTGTAAGCCTGTATCTGGGAGACCATTTGAAAAAAAGCCTTTCCCATAC
CGCGCTGCTAGGGGCCGGATTCGTTCTGTTCTGCGATATCCTTGGCCGGATCATCATTTACCCATACGAAATTCCGATCA
GTCTGACCGTGGGCGTGCTCGGAAGCGGTATTTTCATTTACTTACTGATGAGGAGAAAGGCTTATGACTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.839

97.792

0.536

Multiple sequence alignment