Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA919_RS12820 Genome accession   NZ_CP021286
Coordinates   2831012..2831695 (+) Length   227 a.a.
NCBI ID   WP_014844635.1    Uniprot ID   Q5X240
Organism   Legionella pneumophila subsp. pneumophila strain Albuquerque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2826012..2836695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA919_RS12800 - 2826027..2827759 (+) 1733 Protein_2469 tetratricopeptide repeat protein -
  CA919_RS12805 - 2827865..2829253 (-) 1389 WP_014844632.1 phosphomannomutase/phosphoglucomutase -
  CA919_RS12810 dut 2829254..2829712 (-) 459 WP_014844633.1 dUTP diphosphatase -
  CA919_RS12815 coaBC 2829739..2830935 (-) 1197 WP_014844634.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA919_RS12820 radC 2831012..2831695 (+) 684 WP_014844635.1 DNA repair protein RadC Machinery gene
  CA919_RS12825 - 2831731..2831967 (+) 237 WP_014844636.1 hypothetical protein -
  CA919_RS12830 lepB 2832047..2835931 (+) 3885 WP_014844637.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CA919_RS12835 thpR 2836055..2836618 (-) 564 WP_015961643.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25769.41 Da        Isoelectric Point: 6.7654

>NTDB_id=192384 CA919_RS12820 WP_014844635.1 2831012..2831695(+) (radC) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAIFISSGNNRKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=192384 CA919_RS12820 WP_014844635.1 2831012..2831695(+) (radC) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCATTTTCATCAGTTCGGGTAACAATAGAAAATCTTGTTTGCAACTAGCCTATGAGCTTACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCACCCCTCGGGCTTGTCTGACGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X240

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.393

94.273

0.419