Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BBD42_RS08330 Genome accession   NZ_CP016808
Coordinates   1986733..1987104 (-) Length   123 a.a.
NCBI ID   WP_237163510.1    Uniprot ID   -
Organism   Paenibacillus sp. BIHB 4019     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1981733..1992104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD42_RS32660 (BBD42_08245) - 1981845..1986338 (-) 4494 WP_269467261.1 collagen-like protein -
  BBD42_RS31720 - 1986391..1986540 (-) 150 WP_172455433.1 hypothetical protein -
  BBD42_RS08330 (BBD42_08255) nucA/comI 1986733..1987104 (-) 372 WP_237163510.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BBD42_RS08335 (BBD42_08260) - 1987409..1988155 (-) 747 WP_099517785.1 DsbA family oxidoreductase -
  BBD42_RS08340 (BBD42_08265) - 1988308..1989351 (-) 1044 WP_099517786.1 hypothetical protein -
  BBD42_RS08345 (BBD42_08270) - 1989489..1989647 (-) 159 WP_056035203.1 small acid-soluble spore protein P -
  BBD42_RS08350 (BBD42_08275) - 1989663..1990010 (-) 348 WP_099517787.1 hypothetical protein -
  BBD42_RS08360 (BBD42_08285) serS 1990440..1991723 (-) 1284 WP_099517788.1 serine--tRNA ligase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13614.21 Da        Isoelectric Point: 5.7529

>NTDB_id=192338 BBD42_RS08330 WP_237163510.1 1986733..1987104(-) (nucA/comI) [Paenibacillus sp. BIHB 4019]
MGWLDELAKDWNTAEGTDYTLYFPADRYPETGKHIKDAIAAGKSPICTIDREGADQNRKKSLQGVKVKKGYDRDEWPMAM
CAEGGSGAHIAYIDPSDNRGAGSWVSNQLEKYPDGSRIAFVIK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=192338 BBD42_RS08330 WP_237163510.1 1986733..1987104(-) (nucA/comI) [Paenibacillus sp. BIHB 4019]
ATGGGCTGGCTTGATGAGCTGGCGAAAGATTGGAATACAGCAGAAGGAACGGACTACACGTTATATTTTCCGGCCGATCG
GTATCCAGAGACAGGCAAGCACATTAAAGATGCGATTGCAGCGGGAAAATCTCCTATTTGTACGATTGATCGGGAAGGCG
CGGATCAGAATCGGAAAAAATCTTTGCAGGGCGTAAAGGTGAAGAAAGGCTACGATCGTGATGAATGGCCGATGGCTATG
TGTGCGGAAGGCGGGAGCGGCGCCCATATTGCTTATATTGATCCATCGGATAATCGCGGAGCGGGTTCATGGGTCAGCAA
TCAGCTGGAAAAATACCCGGATGGTTCGAGAATTGCTTTTGTCATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(27-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.678

98.374

0.577

Multiple sequence alignment