Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CA921_RS13370 Genome accession   NZ_CP021283
Coordinates   2962167..2962958 (-) Length   263 a.a.
NCBI ID   WP_061691890.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957167..2967958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS13355 legS1 2957933..2959090 (-) 1158 WP_061691888.1 Dot/Icm T4SS effector LegS1 -
  CA921_RS16705 - 2959358..2959528 (-) 171 WP_154695533.1 hypothetical protein -
  CA921_RS13365 dacB 2960282..2962075 (-) 1794 WP_027266323.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase -
  CA921_RS13370 spo0J 2962167..2962958 (-) 792 WP_061691890.1 ParB/RepB/Spo0J family partition protein Regulator
  CA921_RS13375 ceg33 2963075..2963578 (-) 504 WP_027266321.1 Dot/Icm T4SS effector Ceg33 -
  CA921_RS13380 - 2963749..2964498 (-) 750 WP_027266320.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  CA921_RS13385 rsmB 2964495..2965778 (-) 1284 WP_061691891.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CA921_RS13390 fmt 2965775..2966719 (-) 945 WP_061691892.1 methionyl-tRNA formyltransferase -
  CA921_RS13395 def 2966716..2967228 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30101.25 Da        Isoelectric Point: 5.9797

>NTDB_id=192320 CA921_RS13370 WP_061691890.1 2962167..2962958(-) (spo0J) [Legionella pneumophila subsp. pneumophila strain Allentown]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLIGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIINDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=192320 CA921_RS13370 WP_061691890.1 2962167..2962958(-) (spo0J) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTACAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAAC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATTGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGCTATCCTTTGGC
CATGCTCGTGTATTGATTGGTTTAAATCCTGAACAACAAGAAATGTTTGCTCACCAGGTTATTGGAGAGGAATGGTCTGT
CAGGCACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTATAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(7-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369