Detailed information NTG0192285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA921_RS06005
• Genome accession: NZ_CP021283
• Coordinates: 1321846..1322871 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain Allentown
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1316846..1327871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA921_RS05975	-	1317277..1317594 (+)	318	WP_061691990.1	DUF2845 domain-containing protein	-
CA921_RS05980	-	1317631..1318002 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
CA921_RS05985	-	1318059..1319774 (-)	1716	WP_027220722.1	NAD-dependent malic enzyme	-
CA921_RS05990	-	1319854..1320237 (+)	384	WP_027220721.1	hypothetical protein	-
CA921_RS05995	surE	1320240..1320998 (+)	759	WP_061691991.1	5'/3'-nucleotidase SurE	-
CA921_RS06000	-	1321017..1321760 (+)	744	WP_027220720.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA921_RS06005	rpoS	1321846..1322871 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
CA921_RS06010	hmgA	1322974..1324224 (-)	1251	WP_061691992.1	homogentisate 1,2-dioxygenase	-
CA921_RS06015	-	1324371..1325114 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA921_RS06020	ruvC	1325114..1325638 (+)	525	WP_011215334.1	crossover junction endodeoxyribonuclease RuvC	-
CA921_RS06025	ruvA	1325635..1326234 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
CA921_RS06030	-	1326284..1326604 (+)	321	WP_061691993.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=192285 CA921_RS06005 WP_011213596.1 1321846..1322871(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Allentown]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=192285 CA921_RS06005 WP_011213596.1 1321846..1322871(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATTGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548