Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BC359_RS16945 Genome accession   NZ_CP016790
Coordinates   3276694..3278514 (-) Length   606 a.a.
NCBI ID   WP_078990186.1    Uniprot ID   A0A8I1MEV7
Organism   Priestia flexa strain KLBMP 4941     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3271694..3283514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC359_RS16915 (BC359_16720) - 3272121..3272762 (-) 642 WP_025908133.1 GTP pyrophosphokinase -
  BC359_RS16920 (BC359_16725) - 3272782..3273168 (-) 387 WP_025908134.1 hypothetical protein -
  BC359_RS16925 (BC359_16730) - 3273472..3274062 (+) 591 WP_078990183.1 CYTH domain-containing protein -
  BC359_RS16930 (BC359_16735) - 3274067..3274711 (+) 645 WP_078990184.1 lytic transglycosylase domain-containing protein -
  BC359_RS16935 (BC359_16740) - 3274932..3275342 (+) 411 WP_061785625.1 globin -
  BC359_RS16940 (BC359_16745) - 3275339..3276220 (+) 882 WP_078990185.1 ClpXP adapter SpxH family protein -
  BC359_RS21860 - 3276477..3276653 (+) 177 WP_090752849.1 hypothetical protein -
  BC359_RS16945 (BC359_16750) pepF 3276694..3278514 (-) 1821 WP_078990186.1 oligoendopeptidase F Regulator
  BC359_RS16950 (BC359_16755) - 3278665..3279852 (-) 1188 WP_078990187.1 competence protein CoiA -
  BC359_RS16955 (BC359_16760) cls 3279955..3281472 (-) 1518 WP_078990188.1 cardiolipin synthase -
  BC359_RS16960 (BC359_16765) mecA 3281553..3282236 (-) 684 WP_061785448.1 adaptor protein MecA -
  BC359_RS16965 (BC359_16770) - 3282558..3283220 (+) 663 WP_061785447.1 TerC family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70113.76 Da        Isoelectric Point: 4.6532

>NTDB_id=192282 BC359_RS16945 WP_078990186.1 3276694..3278514(-) (pepF) [Priestia flexa strain KLBMP 4941]
MSEQSTVKKLPNRSEIKVEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADMLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKMLYTEIASALSYVTPELLAVDEETLKQYLKDSKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREEAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLEKN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=192282 BC359_RS16945 WP_078990186.1 3276694..3278514(-) (pepF) [Priestia flexa strain KLBMP 4941]
ATGAGTGAACAATCCACGGTGAAAAAGCTGCCAAATCGCAGTGAAATTAAAGTAGAAGATACATGGAGATTAGAAGATAT
TTTTGAAACGGATGAAGCGTGGGAGAAAGAATTTCAAGCTGTTAAAGCGTTAGTTCCGGAAATGGAACAATATCGCGGCA
AGCTTGGAGAATCAGCAGACATGCTTTTTAAAGCACTTCAGCAGCAAGATGAACTAACAATGCGGGTCAGCAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACGAACTCATTCTATCAAGGATTAAATGATCGAATTAAAATGTTGTA
TACAGAAATTGCGAGTGCGTTATCTTACGTCACGCCTGAACTATTAGCAGTAGATGAGGAAACGCTAAAACAATATTTAA
AAGATAGCAAGGATTTACAGCTATATGCACATGCGCTGGATGAAGTGAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTCTAGCACAGGCATCTGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCTGATTT
AGAGTTTCCATCTATTAAAGATGAAAACGGGGAAGAAGTGGAGATTACCCACGGTCGTTATATTCGGTTTTTGGAAAGCA
GTGATCGACGCGTTAGAGAAGAAGCGTTTAAAGCCGTCTATGATACGTATGGAAAGTTTAAAAATACATTTGCGAGTACT
CTTAGCGGAACGGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGCCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCAACGGTAAATGAATATCTGCCTCTATTACAGCGCTATATTG
ACCTACGAAAGAAAGTGTTAGGTGTTGATGAGCTTCACATGTATGATCTGTATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAAGGTTTGGCGCCGCTTGGAGAAGAGTACATTTCCATTTTAAA
AGAAGGATTTGAAAATCGCTGGGTTGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATTTTAATGAACTGGCAGGACAATGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCACTCA
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGTGATTATTCAATCTTTGTCGCTGAAGTCGCATCTAC
GTGTAACGAAGCCCTATTAAATGATTATTTATTGAAAACAATCGACGATGAAAAGAAACGATTATACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTTGCTGAATTTGAGCATGAAATTCACGTTCGGGCTCAA
AATGGTGAACCGCTAACACCAGAGCTGCTAACAAAGTTATACTATGATTTAAATAAAAAGTACTTTGGTGATAATTTAGT
CATTGATGAAGAGATTGGCTTAGAGTGGGCAAGAATTCCACATTTCTACTATAATTATTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGCTAAGTAAGCAAATTCTTGAAGAAGGAGACGCGGCTGTTGAGCGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTATCCAATCGAAGTGCTAAAACGCGCAGGAGTGGATATGACAACTGCTGAACCAATCAAAGA
AGCATTAGAAGTGTTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAAAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.02

0.484

Multiple sequence alignment